Search Results for "single vcf to multiple vcf"
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Showing 21 open source projects for "single vcf to multiple vcf"
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vcf2maf
Convert a VCF into a MAF
vcf2maf is a Perl-based tool developed by the Memorial Sloan Kettering Cancer Center to convert Variant Call Format (VCF) files into Mutation Annotation Format (MAF) files. This conversion standardizes variant annotations, facilitating downstream analyses in cancer genomics. -
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vcard program vCardz_i
VCF vcard, XML xcard, JSON jcard;View, Edit, Convert, Export, CSV, QR
vCardz_i supports VCF, XML and JSON vcards; View, Create, Edit, Extract, Convert, Import CSV, TAB or |, Export CSV, Excel® .xlsx, TXT or ODS spreadsheet. Create vcard QR code images, in MEcard, vCard or xCard format., or create your own QR from your text entry. Voice output of selected data or a complete address. Create multiple Themes to easily switch appearance. -
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vcparse
A simplistic C++ VCF/VCARD parser
This single-file project transcodes VCF/VCARD files into JSON for easy filtering with grep. VCARD support is incomplete but can be extended. This project was motivated from recovering contacts backed up from an Android phone in a human-readable yet machine-friendly format. -
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Multiuser HylaFAX PHP/MySQL Web interface for viewing faxes online, downloading & emailing in PDF format, and categorizing & archiving all sent and received faxes.
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Simple Contacts
Easy and quick contact management with no ads, handles groups
A lightweight smart contact app for managing your contacts loved by millions of people. The contacts can either be stored on your device only, or they can also be synchronized by different means. This phone number smart contact phone book will help you keep your contacts in one place without the hassle of backing up your contacts as the contacts backup are always in sync with the contacts you add. This app light on space and is effective when you have to make contacts backup and keep a phone... -
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Free VCF file to CSV or Excel converter
Excel VBA Script to convert VCF file with multiple entries to CSV file
This is an Excel based VBA script used to import bulk .VCF files that contain more than 1 Vcard and then convert them to a comma separated .CSV file or Excel xls file that can then be imported into Outlook, Google, or any other application that supports import of contacts using CSV files. This has been written to support VCF 2.0, 2.1, 3.0 and 4.0 formatted files including those with printable encoding (MIME) and has been tested with bulk VCF files from Backupify, Google Contacts (Gmail... -
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...The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http://samtools.github.io/hts-specs/VCFv4.2.pdf). HTDP provides quick filtering functionality and can process data consisting of single or multiple input files. Citation: Madanecki P, Bałut M, Buckley PG, Ochocka JR, Bartoszewski R, Crossman DK, et al. (2018) High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets. ...
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VCF Split
Vcard File Splitter
This little Java Program splits a VCF file consisting of multiple vcarss into single files. This is particualry useful if you want to import a vcf into Microsoft Outlook. It ist a executable jar file, so starting it with java -jar vcfsplitter.jar or double clicking it in a gui should work fine. You can also specify evertyhing by command line as follows: java -jar vcfsplitter.jar <infile> <outdir> For the source click on the website link.. -
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REDO
REDO - RNA Editing Detection in Organelle
REDO is a comprehensive application tool for identifying RNA editing events in organelles based on variant call results (VCF files). It is a suite of Perl scripts and can work easily and directly in any operating system installed Perl and R Environment. The stringent rule depended filters and statistical filters are used in REDO for reducing false positive rate. It can provide detailed annotations, statistics and figures for RNA editing sites. REDO also can detect RNA editing events in multiple samples simultaneously and identify differential proportion of RNA editing events in different samples. ... -
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Split VCF
Split Contacts
Google Exports Contacts as Single File. But Where as Nokia and Microsoft Supports Single Files. I designed this Software as a solution to this Problem. For password mail Me to arjun143malli@gmail.com -
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HomSI
Homozygous Stretch Identifier from next-generation sequencing data
...Recently, the advent of next generation sequencing enables the concurrent identification of homozygous regions and the detection of mutations relevant for diagnosis, using data from a single sequencing experiment. In this respect, we have developed a novel tool that identifies homozygous regions using deep sequence data. Using *.vcf files as an input file, our program identifies the majo -
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VCFSplitter
Splits combined VCF to individual VCF files
This software shall help you to split your single vcf file which has multiple vcf entries to individual VCF files. -
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vCard Converter for Outlook
Convert vCard to Outlook Contacts Moreover Outlook to vCard in Bulk
For making the contacts portable on every device, a Two-Way Conversion program like vCard Converter Software must be used. It’s a Dual-Purpose utility that assures complete information security and speed during Bulk-operations. Multiple contacts can be exported and imported bi-directionally. So, without any doubt, convert Outlook contacts to vCard (VCF files) and side-by-side also convert vCard to Outlook Address book in batch using one App only. -
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estMOI
estimating Multiplicity Of Infection using short read sequence data
...It is primarily developed to address the limitations of current laboratory (PCR) based estimates of multiplicity using high throughput sequence data as follows: INPUT files: estMOI requires a BAM (alignment output of short reads to the reference genome), VCF (a file with information on variant calls) and FASTA (reference genome) files. 1. Short reads are aligned to a reference genome using BWA, BOWTIE, SMALT or other short read aligners to generate a BAM file. 2. Single Nucleotide Polymorphysms (SNPs) are then identified using SAMTools in the VCF format. 3. The reference FASTA file is expected to be indexed using 'samtools faidx' to generate a *.fai file. ... -
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rcard
ncurses VCard 3.0 contact management editor
A vcard 3.0 contact management editor developed for ncurses. It can: - load a vcf file - show all the contacts in a list - show more information about a single contact - perform a simple search in the contacts list - edit contacts - support UTF-8 (currently not on WIN32, though I'm not sure WIN32 console is actually able to support UTF-8) - convert the VCF(s) to Pine/Alpine addressbook format - import images from files as contacts photos The idea is based upon rolo (which you can find at SourceForge.net, too), but no original code remains. ... -
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PhonixJ
A cross-platform phone-book written in Java using SWT.
...Features: - Add/remove contacts - Create vCard v.3.0 - Create Contact Card in .SVG - Create mail envelope address - Sophisticated search engine - Customizable printing options - Support for email and browser clients - Batch export/import of the contacts via .vcf (3.0) files (tested with Kontact) - A tool to select multiple e-mail addresses, copy them to clipboard and open compose mail Current version: 1.0.3 News: - Added notes record to each contact - If you want to see it in your own language, please download the Main.properties, and translate it, then send it back to me. Please contact me if you'd help, and specify your special needs if any. -
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VCard to XLS is a utility that I created to convert a VCard file with multiple entries into Microsoft Excel format. Once in Excel, the file can be saved as a Comma Separated Values file (.CSV) and imported into may different programs.
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abcontamination
Plots allele balance histogram and assesses sample contamination.
This software (plot_allele_balance_find_contamination.pl) produces an allele balance histogram and assesses DNA contamination of a single sample in a VCF file (vers. 3 & 4) that has been annotated in the info field for the AB=<num> metric in the range 0 - 1.0. It requires that the R statistical package is installed and in your path and can be run on the Linux, Unix or Mac computer. It does not work on multi-sample VCF files. If your VCF is not annotated for AB=<num> you may do this using the Broad's GATK annotation functions, the VCF file and the sample's bam file. -
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A command line utility for searching vCard (version 3.0) files which hold multiple contacts. The goal it to provide the user a convenient and easy to use means of accessing personal contact information, particularly phone numbers, in a desktop setting.
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