Open Source Java Data Visualization Software - Page 12

The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu.

Development of a snazzy Java program to simulate the growth and competition of entities in a limited environment.

Entrance is the MySQL browser with charts and tools for data exploration. Requires JRE 1.5. Visit our new web site, http://dbentrance.com/, for more details.

A tool providing a collection of methods for probability elicitation.

Euklid is a program to analyse and simulate geometric shapes interactively in 2 and 3 dimensions.

The EventStream Experimenter Workbench is a data collection framework with integrated visualization techniques to facilitate eye tracking research. The software currently supports the ASL eye trackers.

Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.

Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.

ExplorViz is a web-based software visualization for large software landscapes. It features two different perspectives: the landscape-level perspective and the application-level perspective. The former visualizes the systems, nodes, and application existing in the software landscape. The latter one utilizes the city metaphor to visualize the entities and communication happening in one application. For installation instructions and downloads see http://www.explorviz.net

Exporter - A database and dataminig tool (coded in Java)

Prototype for a framework and user interface for combining various structured search and document clustering techniques.

An extensible TIFF codec for Java 1.2 Advanced Imaging, allowing for extended compression types, writing tiled images etc. Used by GeoTIFF-JAI project.

EyesRay render a 3D scene with the raytracing algorithm. Some specifics points are: a scene loader, the support of transparency, avaibility to generate images (ppm format)...

FDTD Antenna Simulator is a complete software package for antenna analysis and design using the FDTD method.

Visualization of finite state machines as a network graph. Accepted input files at the moment are: net files exported from xfst (Xerox Finite-State Tool) and lexc files (Finite-State Lexicon Compiler).

Facelift is a visualization and analysis software for online social networking services. It displays a given community as a node-link diagram and provides several search / filtering functions as well as cluster analysis features.

This projects hosts the worlds fastest algorithms for the labeling of point-features. It especially looks for algorithms thar are free of constraints, applicable to many scenarios (e.g., visualization, maps...) and do not need any preprocessing.

Get an up-to-date view of what's happening in your social network. You can browse based on specific keywords (tags) and see who's talking about what in your proximity.

a java interface for the portfolio risk analysis (PRA) engine.

** Deprecated ** Important! All of the software on this web site has been deprecated, and has not been maintained since 2014. All of this software is now being maintained on Github - and can be obtained from https://github.com/jpaulm . Changes and enhancements are still ongoing, and while older software should still work, newer features described in the literature will not be available in SourceForge. The old license was the Artistic license - the software is now in process of being converted to LGPL. This will gradually take place (on Github) over the next few months (in 2016). JavaFBP is now also on Maven.

Flow4J is a java framework, that enables the user to model process flow with a gui interface. The flow may include tasks, decisions or calls to other process flows. The saved flow is in a jar file together with its bytecode.

Flow4J-Eclipse is a plugin for the eclipse IDE that enables the modelling of process flows in a drag and drop manner. Building a Flow4J project creates the flow\'s java source code and is then compiled by the JDT plugin. Uses the eclipse-gef framework.

FlowtificX is a scientific workflow modelling, collaboration, execution and tracing tool that allows scientists to concentrate on their science and to alleviate the burden of the complexity of scientific toolsets.

Forge of Eternity is being reborn as a heightfield editor, and other functionality will be worried about when it is working ;)

Calculates the shape of a telescope mirror from a sequence of Foucault test images. Java-based GUI simplifies entering and organizing measurement data. Logging and comparison functions enable quantification of the effects of various figuring strokes.