Open Source Linux Data Visualization Software - Page 6
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Data Visualization Software for Linux
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ChaosTools.jl
Tools for the exploration of chaos and nonlinear dynamics
A Julia module that offers various tools for analyzing nonlinear dynamics and chaotic behavior. It can be used as a standalone package, or as part of DynamicalSystems.jl. All further information is provided in the documentation, which you can either find online or build locally by running the docs/make.jl file. ChaosTools.jl is the jack-of-all-trades package of the DynamicalSystems.jl library: methods that are not extensive enough to be a standalone package are added here. You should see the full DynamicalSystems.jl library for other packages that may contain functionality you are looking for but did not find in ChaosTools.jl. -
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ClimateTools.jl
Climate science package for Julia
Climate analysis tools in Julia. ClimateTools.jl is a collection of commonly-used tools in Climate science. Basics of climate field analysis are covered, with some forays into exploratory techniques associated with climate scenario design. The package is aimed to ease the typical steps of analysis of climate models outputs and gridded datasets (support for weather stations is a work-in-progress). Climate indices and bias correction functions are coded to leverage the use of multiple threads. To gain maximum performance, use (bash shell Linux/MacOSX) export JULIA_NUM_THREADS=n, where n is the number of threads. To get an idea of the number of threads you can use type (in Julia) Sys.THREADS. This is especially useful for bias correction. -
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CompatHelper.jl
Automatically update the [compat] entries for your Julia dependencies
CompatHelper.jl is a Julia package which keeps your Project.toml [compat] entries up to date. -
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ConformalPrediction.jl
Predictive Uncertainty Quantification through Conformal Prediction
ConformalPrediction.jl is a package for Predictive Uncertainty Quantification (UQ) through Conformal Prediction (CP) in Julia. It is designed to work with supervised models trained in MLJ (Blaom et al. 2020). Conformal Prediction is easy-to-understand, easy-to-use and model-agnostic and it works under minimal distributional assumptions. Intuitively, CP works under the premise of turning heuristic notions of uncertainty into rigorous uncertainty estimates through repeated sampling or the use of dedicated calibration data. -
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Cytoscape.js
Graph theory library for visualization and analysis
A fully featured graph library written in pure JS. Permissive open source license (MIT) for the core Cytoscape.js library and all first-party extensions. Used in commercial projects and open-source projects in production. Designed for users first, for both frontfacing app usecases and developer usecases. Highly optimized. Compatible with All modern browsers. Legacy browsers with ES5 and canvas support. ES5 and canvas support are required, and feature detection is used for optional performance enhancements. Browsers circa 2012 support ES5 fully: IE10, Chrome 23, Firefox 21, Safari 6 (caniuse). Browsers with partial but sufficient ES5 support also work, such as IE9 and Firefox 4. The documentation and examples are not optimized for old browsers, although the library itself is. Some demos may not work in old browsers in order to keep the demo code simple. -
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DFTK.jl
Density-functional toolkit
The density-functional toolkit, DFTK for short, is a collection of Julia routines for experimentation with plane-wave density-functional theory (DFT). The unique feature of this code is its emphasis on simplicity and flexibility with the goal of facilitating algorithmic and numerical developments as well as interdisciplinary collaboration in solid-state research. -
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Enzyme.jl
Julia bindings for the Enzyme automatic differentiator
This is a package containing the Julia bindings for Enzyme. This is very much a work in progress and bug reports/discussion is greatly appreciated. Enzyme is a plugin that performs automatic differentiation (AD) of statically analyzable LLVM. It is highly-efficient and its ability perform AD on optimized code allows Enzyme to meet or exceed the performance of state-of-the-art AD tools. -
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FastGaussQuadrature.jl
Julia package for Gaussian quadrature
A Julia package to compute n-point Gauss quadrature nodes and weights to 16-digit accuracy and in O(n) time. So far the package includes gausschebyshev(), gausslegendre(), gaussjacobi(), gaussradau(), gausslobatto(), gausslaguerre(), and gausshermite(). This package is heavily influenced by Chebfun. -
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Ferrite.jl
Finite element toolbox for Julia
A simple finite element toolbox written in Julia. -
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FrankWolfe.jl
Julia implementation for various Frank-Wolfe and Conditional Gradient
This package is a toolbox for Frank-Wolfe and conditional gradient algorithms. Frank-Wolfe algorithms were designed to solve optimization problems where f is a differentiable convex function and C is a convex and compact set. They are especially useful when we know how to optimize a linear function over C in an efficient way. -
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FromFile.jl
Julia enhancement proposal (Julep) for implicit per file module
This package exports a macro @from, which can be used to import objects from files. The hope is that you will never have to write include again. FromFile is a Julia Language package. To install FromFile, please open Julia's interactive session (known as REPL) and press ] key in the REPL to use the package mode. -
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GeoInterface.jl
A Julia Protocol for Geospatial Data
This Package describe a set of traits based on the Simple Features standard (SF) for geospatial vector data, including the SQL/MM extension with support for circular geometry. Using these traits, it should be easy to parse, serialize and use different geometries in the Julia ecosystem, without knowing the specifics of each individual package. In that regard it is similar to Tables.jl, but for geometries instead of tables. -
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Gnuplot.jl
Julia interface to gnuplot
Gnuplot.jl is a simple package able to send both data and commands from Julia to an underlying gnuplot process. Its main purpose it to provide a fast and powerful data visualization framework, using an extremely concise Julia syntax. It also has automatic display of plots in Jupyter, Juno and VS Code. -
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HiGHS.jl
Julia wrapper for the HiGHS solver
HiGHS.jl is a wrapper for the HiGHS solver. -
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HomotopyContinuation.jl
A Julia package for solving systems of polynomials
HomotopyContinuation.jl is a Julia package for solving systems of polynomial equations by numerical homotopy continuation. Many models in the sciences and engineering are expressed as sets of real solutions to systems of polynomial equations. We can optimize any objective whose gradient is an algebraic function using homotopy methods by computing all critical points of the objective function. An important special case is when the objective function is the euclidean distance to a given point. An example of an non-algebraic objective function whose derivative is algebraic is the Kullback–Leibler divergence. Homotopy continuation methods allow us to study the conformation space of molecules as for example cyclooctane (CH₂)₈. This molecule consists of eight carbon atoms aligned in a ring, and eight hydrogen atoms, each of which is attached to one of the carbon atoms. -
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JUDI.jl
Julia Devito inversion
JUDI is a framework for large-scale seismic modeling and inversion and is designed to enable rapid translations of algorithms to fast and efficient code that scales to industry-size 3D problems. The focus of the package lies on seismic modeling as well as PDE-constrained optimization such as full-waveform inversion (FWI) and imaging (LS-RTM). Wave equations in JUDI are solved with Devito, a Python domain-specific language for automated finite-difference (FD) computations. JUDI's modeling operators can also be used as layers in (convolutional) neural networks to implement physics-augmented deep learning algorithms thanks to its implementation of ChainRules's rrule for the linear operators representing the discre wave equation. -
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Krylov.jl
A Julia Basket of Hand-Picked Krylov Methods
If you use Krylov.jl in your work, please cite it using the metadata given in CITATION.cff. -
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LineSearches.jl
Line search methods for optimization and root-finding
Line search methods for optimization and root-finding. This package provides an interface to line search algorithms implemented in Julia. The code was originally written as part of Optim, but has now been separated out to its own package. -
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LossFunctions.jl
Julia package of loss functions for machine learning
This package represents a community effort to centralize the definition and implementation of loss functions in Julia. As such, it is a part of the JuliaML ecosystem. The sole purpose of this package is to provide an efficient and extensible implementation of various loss functions used throughout Machine Learning (ML). It is thus intended to serve as a special purpose back-end for other ML libraries that require losses to accomplish their tasks. To that end we provide a considerable amount of carefully implemented loss functions, as well as an API to query their properties (e.g. convexity). Furthermore, we expose methods to compute their values, derivatives, and second derivatives for single observations as well as arbitrarily sized arrays of observations. In the case of arrays a user additionally has the ability to define if and how element-wise results are averaged or summed over. -
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MIRT.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
MIRT.jl is a collection of Julia functions for performing image reconstruction and solving related inverse problems. It is very much still under construction, although there are already enough tools to solve useful problems like compressed sensing MRI reconstruction. Trying the demos is a good way to get started. The documentation is even more still under construction. -
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MLJBase.jl
Core functionality for the MLJ machine learning framework
Repository for developers that provides core functionality for the MLJ machine learning framework. MLJ is a Julia framework for combining and tuning machine learning models. This repository provides core functionality for MLJ. -
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PGFPlotsX.jl
Plots in Julia using the PGFPlots LaTeX package
PGFPlotsX is a Julia package to generate publication quality figures using the LaTeX library PGFPlots. It is similar in spirit to the package PGFPlots.jl but it tries to have a very close mapping to the PGFPlots API as well as minimize the number of dependencies. The fact that the syntax is similar to the TeX version means that examples from Stack Overflow and the PGFPlots manual can easily be incorporated in the Julia code. -
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PairPlots.jl
Beautiful and flexible vizualizations of high dimensional data
Beautiful and flexible visualizations of high-dimensional data. This package produces pair plots, otherwise known as corner plots or scatter plot matrices: grids of 1D and 2D histograms that allow you to visualize high-dimensional data. Pair plots are an excellent way to visualize the results of MCMC simulations, but are also a useful way to visualize correlations in general data tables. The default styles of this package roughly reproduce the output of the Python library corner.py for a single series and chainconsumer.py for multiple series. If these are not to your tastes, the package aims to be highly configurable. -
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Parquet.jl
Julia implementation of Parquet columnar file format reader
A parquet file or dataset can be loaded using the read_parquet function. A parquet dataset is a directory with multiple parquet files, each of which is a partition belonging to the dataset. -
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PeriodicTable.jl
Periodic Table for Julians
A very simple package for accessing elements in the Periodic Table. PeriodicTable.jl provides a Julia interface to a small database of element properties for all of the elements in the periodic table. In particular PeriodicTable exports a global variable called elements, which is a collection of Element data structures.
