https://sourceforge.net/p/biskit/activity/Recent activity for BisKitenSat, 07 Jan 2017 14:25:50 -0000https://sourceforge.net/p/biskit/bugs/65/New versions of numpy got rid of OldnumericRaik GruenbergSat, 07 Jan 2017 14:25:50 -0000https://sourceforge.net/p/biskit/bugs/65/https://sourceforge.net/p/biskit/bugs/65/?limit=25#5692This issue has been closed with release 2.4.2 -- Note, this issue tracker is being...Raik GruenbergSat, 07 Jan 2017 14:24:52 -0000https://sourceforge.net/p/biskit/bugs/65/?limit=25#5692https://sourceforge.net/p/biskit/code/1148/empty repo, anounce move to githubRaik GruenbergMon, 13 Jun 2016 05:37:15 -0000https://sourceforge.net/p/biskit/code/1148/https://sourceforge.net/p/biskit/code/1147/Fixed concat profiles when empty profiles not p...Daniel ÁlvarezTue, 15 Mar 2016 20:42:24 -0000https://sourceforge.net/p/biskit/code/1147/https://sourceforge.net/p/biskit/code/1146/Cleaned errors due to N.take and N.averageDaniel ÁlvarezTue, 01 Mar 2016 21:14:29 -0000https://sourceforge.net/p/biskit/code/1146/https://sourceforge.net/p/biskit/code/1145/Fixed nonzero functions from oldnumeric migrationDaniel ÁlvarezTue, 01 Mar 2016 13:10:55 -0000https://sourceforge.net/p/biskit/code/1145/https://sourceforge.net/p/biskit/bugs/65/?limit=25#f91ethe conversion should look like this: y = oldnumeric.nonzero(x) to y = numpy.nonzero(x)[0]...Raik GruenbergMon, 05 Oct 2015 15:06:23 -0000https://sourceforge.net/p/biskit/bugs/65/?limit=25#f91ehttps://sourceforge.net/p/biskit/bugs/65/?limit=25#39ce/699fI adressesed it already. I didn't check the nonzero behaviour so I will take a look...Daniel ÁlvarezMon, 05 Oct 2015 14:45:28 -0000https://sourceforge.net/p/biskit/bugs/65/?limit=25#39ce/699fhttps://sourceforge.net/p/biskit/bugs/65/?limit=25#39ceYes, acknowledged. Most of those where probably oldnumeric.nonzero() calls. I was...Raik GruenbergMon, 05 Oct 2015 14:16:02 -0000https://sourceforge.net/p/biskit/bugs/65/?limit=25#39cehttps://sourceforge.net/p/biskit/code/1144/Replaced oldnumeric with standard numpy callsDaniel ÁlvarezSun, 04 Oct 2015 19:51:34 -0000https://sourceforge.net/p/biskit/code/1144/https://sourceforge.net/p/biskit/bugs/65/New versions of numpy got rid of OldnumericDaniel ÁlvarezThu, 01 Oct 2015 20:13:53 -0000https://sourceforge.net/p/biskit/bugs/65/https://sourceforge.nethttp%3A//sourceforge.net/projects/biskit/files/OldFiles/biskit-2.2.tar.gz/downloadBisKitSat, 10 Jan 2015 09:45:34 -0000http://sourceforge.net/projects/biskit/files/OldFiles/biskit-2.2.tar.gz/downloadhttps://sourceforge.net/p/biskit/code/1143/adapt to AmberTools 14Raik GruenbergFri, 25 Jul 2014 16:09:13 -0000https://sourceforge.net/p/biskit/code/1143/https://sourceforge.net/p/biskit/code/1142/Branch for adaptation to Amber / AmberTools ver...Raik GruenbergFri, 25 Jul 2014 15:51:36 -0000https://sourceforge.net/p/biskit/code/1142/https://sourceforge.net/p/biskit/code/1141/bugfix in input handlingRaik GruenbergFri, 25 Jul 2014 14:45:22 -0000https://sourceforge.net/p/biskit/code/1141/https://sourceforge.net/p/biskit/code/1140/typoRaik GruenbergSun, 27 Apr 2014 17:42:12 -0000https://sourceforge.net/p/biskit/code/1140/https://sourceforge.net/p/biskit/code/1139/better error treatment for PDB download with in...Raik GruenbergSat, 26 Apr 2014 20:30:25 -0000https://sourceforge.net/p/biskit/code/1139/https://sourceforge.net/p/biskit/code/1138/activate file cleanup in test case; also remove...Raik GruenbergSat, 26 Apr 2014 00:32:47 -0000https://sourceforge.net/p/biskit/code/1138/https://sourceforge.net/p/biskit/bugs/64/SurfaceRacer class wipes input fileRaik GruenbergSat, 26 Apr 2014 00:04:09 -0000https://sourceforge.net/p/biskit/bugs/64/https://sourceforge.net/p/biskit/code/1137/bugfix: fix regression from previous SurfaceRac...Raik GruenbergSat, 26 Apr 2014 00:03:46 -0000https://sourceforge.net/p/biskit/code/1137/https://sourceforge.net/p/biskit/bugs/58/ExeConfig breaks reading in custom exe_t_coffee.datRaik GruenbergFri, 25 Apr 2014 21:55:23 -0000https://sourceforge.net/p/biskit/bugs/58/https://sourceforge.net/p/biskit/bugs/58/?limit=25#26b8Sorry about the delay ;) I don't know exactly what went wrong with this config file...Raik GruenbergFri, 25 Apr 2014 21:55:03 -0000https://sourceforge.net/p/biskit/bugs/58/?limit=25#26b8https://sourceforge.net/p/biskit/code/1136/putative bugfix for issue #58Raik GruenbergFri, 25 Apr 2014 21:52:21 -0000https://sourceforge.net/p/biskit/code/1136/https://sourceforge.net/p/biskit/bugs/63/Reduce errorRaik GruenbergFri, 25 Apr 2014 21:40:02 -0000https://sourceforge.net/p/biskit/bugs/63/https://sourceforge.net/p/biskit/bugs/63/?limit=25#3cacThis seems to be an issue unrelated to reduce.py. Something is wrong with the user...Raik GruenbergFri, 25 Apr 2014 21:39:31 -0000https://sourceforge.net/p/biskit/bugs/63/?limit=25#3cachttps://sourceforge.net/p/biskit/bugs/56/?limit=25#3b1fFixed in subversion revision 1135. Note that the updated parser may only work for...Raik GruenbergFri, 25 Apr 2014 21:24:55 -0000https://sourceforge.net/p/biskit/bugs/56/?limit=25#3b1fhttps://sourceforge.net/p/biskit/bugs/56/new TMalign version breaks wrapperRaik GruenbergFri, 25 Apr 2014 21:24:55 -0000https://sourceforge.net/p/biskit/bugs/56/https://sourceforge.net/p/biskit/code/1135/update result parser to TMAlign.f version from ...Raik GruenbergFri, 25 Apr 2014 21:23:13 -0000https://sourceforge.net/p/biskit/code/1135/https://sourceforge.net/p/biskit/code/1134/cosmeticsRaik GruenbergFri, 25 Apr 2014 19:19:15 -0000https://sourceforge.net/p/biskit/code/1134/https://sourceforge.net/p/biskit/code/1133/code documentationRaik GruenbergFri, 25 Apr 2014 19:00:24 -0000https://sourceforge.net/p/biskit/code/1133/https://sourceforge.net/p/biskit/code/1132/force-remove version control folders from templ...Raik GruenbergFri, 25 Apr 2014 18:56:05 -0000https://sourceforge.net/p/biskit/code/1132/https://sourceforge.net/p/biskit/code/1131/revert previous regression (recursive iteration...Raik GruenbergFri, 25 Apr 2014 18:53:29 -0000https://sourceforge.net/p/biskit/code/1131/https://sourceforge.net/p/biskit/code/1130/old bugfix for residue profile length in empty ...Raik GruenbergFri, 25 Apr 2014 15:29:21 -0000https://sourceforge.net/p/biskit/code/1130/