https://sourceforge.net/p/jcvi-vigor/activity/Recent activity for JCVI VIGORenTue, 18 Jun 2019 13:06:24 -0000https://sourceforge.net/p/jcvi-vigor/code/54/fix db attributeJames ChristensenTue, 18 Jun 2019 13:06:24 -0000https://sourceforge.net/p/jcvi-vigor/code/54/https://sourceforge.net/p/jcvi-vigor/code/53/MODIFIED: VIGOR3.pm - modified blast+ calls to have new minimum wordsize of 2, based on blast+ constraints; numerous changes to regexes for parsing blast+ outputjinmanWed, 06 Dec 2017 16:26:48 -0000https://sourceforge.net/p/jcvi-vigor/code/53/https://sourceforge.net/p/jcvi-vigor/code/52/MODIFIED: README.txt - removed references to removed modules, added reference to Config::IniFilesjinmanTue, 17 Oct 2017 17:54:24 -0000https://sourceforge.net/p/jcvi-vigor/code/52/https://sourceforge.net/p/jcvi-vigor/code/51/database updatesjinmanTue, 17 Oct 2017 17:53:16 -0000https://sourceforge.net/p/jcvi-vigor/code/51/https://sourceforge.net/p/jcvi-vigor/code/50/MODIFIED: numerous changes to allow transition from blast to blast+jinmanTue, 17 Oct 2017 17:49:56 -0000https://sourceforge.net/p/jcvi-vigor/code/50/https://sourceforge.net/p/jcvi-vigor/code/49/Deleting junk swetha nettemThu, 11 May 2017 20:29:08 -0000https://sourceforge.net/p/jcvi-vigor/code/49/https://sourceforge.net/p/jcvi-vigor/code/48/swetha nettemMon, 24 Apr 2017 19:43:34 -0000https://sourceforge.net/p/jcvi-vigor/code/48/https://sourceforge.net/p/jcvi-vigor/code/47/Converted fastacmd calls to blast+ blastdbcmdjinmanTue, 28 Mar 2017 15:26:41 -0000https://sourceforge.net/p/jcvi-vigor/code/47/https://sourceforge.net/p/jcvi-vigor/code/46/Migration of formatdb calls to blast+ makeblast...jinmanTue, 28 Mar 2017 14:58:32 -0000https://sourceforge.net/p/jcvi-vigor/code/46/https://sourceforge.net/p/jcvi-vigor/code/45/Creating branch for jinman to change blast call...jinmanTue, 28 Mar 2017 13:47:42 -0000https://sourceforge.net/p/jcvi-vigor/code/45/https://sourceforge.net/p/jcvi-vigor/code/44/Added flavors/ to prod3/configjinmanFri, 24 Mar 2017 19:23:18 -0000https://sourceforge.net/p/jcvi-vigor/code/44/https://sourceforge.net/p/jcvi-vigor/code/43/Added flavors/ to prod3/configjinmanFri, 24 Mar 2017 19:21:53 -0000https://sourceforge.net/p/jcvi-vigor/code/43/https://sourceforge.net/p/jcvi-vigor/code/42/Added flavors/ to prod3/configjinmanFri, 24 Mar 2017 19:20:57 -0000https://sourceforge.net/p/jcvi-vigor/code/42/https://sourceforge.net/p/jcvi-vigor/code/41/Tagging VIGOR3.2jinmanThu, 09 Mar 2017 21:02:06 -0000https://sourceforge.net/p/jcvi-vigor/code/41/https://sourceforge.net/p/jcvi-vigor/code/40/jinman merge of config .ini changesjinmanThu, 09 Mar 2017 20:59:35 -0000https://sourceforge.net/p/jcvi-vigor/code/40/https://sourceforge.net/p/jcvi-vigor/code/39/Merged jmiller's changes back into this branchjinmanThu, 09 Mar 2017 20:55:18 -0000https://sourceforge.net/p/jcvi-vigor/code/39/https://sourceforge.net/p/jcvi-vigor/code/38/Changed default path in runRegressionTests.pljinmanThu, 09 Mar 2017 20:12:03 -0000https://sourceforge.net/p/jcvi-vigor/code/38/https://sourceforge.net/p/jcvi-vigor/code/37/removing db.pm as it's no longer needed with sw...jinmanThu, 09 Mar 2017 20:09:18 -0000https://sourceforge.net/p/jcvi-vigor/code/37/https://sourceforge.net/p/jcvi-vigor/code/36/Changes to VIGOR3.pl and VIGOR3.pm to use .ini ...jinmanThu, 09 Mar 2017 20:08:31 -0000https://sourceforge.net/p/jcvi-vigor/code/36/https://sourceforge.net/p/jcvi-vigor/code/35/Adding config dir to store .ini filesjinmanThu, 09 Mar 2017 20:07:19 -0000https://sourceforge.net/p/jcvi-vigor/code/35/https://sourceforge.net/p/jcvi-vigor/code/34/Creating branch for jinman's switch from sqlite...jinmanThu, 09 Mar 2017 19:19:03 -0000https://sourceforge.net/p/jcvi-vigor/code/34/https://sourceforge.net/p/jcvi-vigor/code/33/The -K command line option. 1 means narrow the ...Jason MillerThu, 09 Mar 2017 11:56:30 -0000https://sourceforge.net/p/jcvi-vigor/code/33/https://sourceforge.net/p/jcvi-vigor/code/32/Put back the branch called select_more_candidates.Jason MillerWed, 08 Mar 2017 21:35:54 -0000https://sourceforge.net/p/jcvi-vigor/code/32/https://sourceforge.net/p/jcvi-vigor/code/31/I removed the branch with this command.Jason MillerWed, 01 Mar 2017 21:39:18 -0000https://sourceforge.net/p/jcvi-vigor/code/31/https://sourceforge.net/p/jcvi-vigor/code/30/I merged the branch into the trunk with this co...Jason MillerWed, 01 Mar 2017 21:36:47 -0000https://sourceforge.net/p/jcvi-vigor/code/30/https://sourceforge.net/p/jcvi-vigor/code/29/I merged the trunk into the branch with this co...Jason MillerWed, 01 Mar 2017 13:16:45 -0000https://sourceforge.net/p/jcvi-vigor/code/29/https://sourceforge.net/p/jcvi-vigor/code/28/runRegressionTests.pl - now correctly counts th...jinmanTue, 31 Jan 2017 16:38:21 -0000https://sourceforge.net/p/jcvi-vigor/code/28/https://sourceforge.net/p/jcvi-vigor/code/27/The -K option, when set, skips the logic of sel...Jason MillerThu, 26 Jan 2017 15:51:43 -0000https://sourceforge.net/p/jcvi-vigor/code/27/https://sourceforge.net/p/jcvi-vigor/code/26/Create a branch for testing ways to select more...Jason MillerFri, 20 Jan 2017 17:47:14 -0000https://sourceforge.net/p/jcvi-vigor/code/26/https://sourceforge.net/p/jcvi-vigor/code/25/Add two sequences to flu A: AKN08864, YP_308665...Jason MillerMon, 28 Nov 2016 19:41:38 -0000https://sourceforge.net/p/jcvi-vigor/code/25/https://sourceforge.net/p/jcvi-vigor/code/24/Add 10 sequences from DQ011855, the complete ge...Jason MillerFri, 18 Nov 2016 18:15:42 -0000https://sourceforge.net/p/jcvi-vigor/code/24/https://sourceforge.net/p/jcvi-vigor/code/23/Add jcvi_testing directoryJason MillerFri, 03 Jun 2016 19:38:33 -0000https://sourceforge.net/p/jcvi-vigor/code/23/https://sourceforge.net/p/jcvi-vigor/code/22/Create branch devel1Jason MillerFri, 03 Jun 2016 15:59:34 -0000https://sourceforge.net/p/jcvi-vigor/code/22/https://sourceforge.net/p/jcvi-vigor/code/21/Tag release with Zika dbJason MillerFri, 03 Jun 2016 15:42:02 -0000https://sourceforge.net/p/jcvi-vigor/code/21/https://sourceforge.net/p/jcvi-vigor/tickets/14/?limit=25#2e75According to this documentation from NCBI written for BLAST 2.2.18, the 'fastacmd'...Jason MillerTue, 24 May 2016 17:10:37 -0000https://sourceforge.net/p/jcvi-vigor/tickets/14/?limit=25#2e75https://sourceforge.net/p/jcvi-vigor/tickets/15/Update BioLinux with VIGORJason MillerTue, 24 May 2016 17:04:14 -0000https://sourceforge.net/p/jcvi-vigor/tickets/15/https://sourceforge.net/p/jcvi-vigor/tickets/14/Install BLAST's fastacmd with VIGORJason MillerTue, 24 May 2016 16:52:06 -0000https://sourceforge.net/p/jcvi-vigor/tickets/14/https://sourceforge.net/p/jcvi-vigor/tickets/12/Installation script to configure paths to blast and scratchJason MillerTue, 24 May 2016 16:47:19 -0000https://sourceforge.net/p/jcvi-vigor/tickets/12/https://sourceforge.net/p/jcvi-vigor/tickets/14/Install BLAST's fastacmd with VIGORJason MillerTue, 24 May 2016 16:45:05 -0000https://sourceforge.net/p/jcvi-vigor/tickets/14/https://sourceforge.net/p/jcvi-vigor/tickets/13/Support NCBI BLAST 2.3Jason MillerTue, 24 May 2016 16:42:57 -0000https://sourceforge.net/p/jcvi-vigor/tickets/13/https://sourceforge.net/p/jcvi-vigor/tickets/12/Installation script to configure paths to blast and scratchJason MillerTue, 24 May 2016 16:34:12 -0000https://sourceforge.net/p/jcvi-vigor/tickets/12/https://sourceforge.net/p/jcvi-vigor/tickets/12/Installation script to configure paths to blast and scratchJason MillerTue, 24 May 2016 16:33:49 -0000https://sourceforge.net/p/jcvi-vigor/tickets/12/https://sourceforge.net/p/jcvi-vigor/tickets/11/Migrate from svn to gitJason MillerTue, 24 May 2016 16:24:48 -0000https://sourceforge.net/p/jcvi-vigor/tickets/11/https://sourceforge.nethttps%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r20/VIGOR3.r20.tgz/downloadJCVI VIGORMon, 23 May 2016 18:42:02 -0000https://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r20/VIGOR3.r20.tgz/downloadhttps://sourceforge.nethttps%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r20/VIGOR3.r20.readme.txt/downloadJCVI VIGORMon, 23 May 2016 18:42:02 -0000https://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r20/VIGOR3.r20.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/20/Updated flu databases; added Zika Virus databas...Paolo AmedeoMon, 23 May 2016 18:26:53 -0000https://sourceforge.net/p/jcvi-vigor/code/20/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r19/VIGOR3.r19.tgz/downloadJCVI VIGORTue, 15 Dec 2015 21:37:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r19/VIGOR3.r19.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r19/VIGOR3.r19.readme.txt/downloadJCVI VIGORTue, 15 Dec 2015 21:37:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r19/VIGOR3.r19.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/19/Updated Respiratory syntactical virus (RSV) dat...Paolo AmedeoTue, 15 Dec 2015 21:06:17 -0000https://sourceforge.net/p/jcvi-vigor/code/19/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r18/VIGOR3.r18.tgz/downloadJCVI VIGORSat, 12 Dec 2015 00:45:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r18/VIGOR3.r18.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r18/VIGOR3.r18.readme.txt/downloadJCVI VIGORSat, 12 Dec 2015 00:45:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r18/VIGOR3.r18.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/18/Corrected headers in Chikungunya virus databases.Paolo AmedeoFri, 11 Dec 2015 22:07:08 -0000https://sourceforge.net/p/jcvi-vigor/code/18/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r17/VIGOR3.r17.tgz/downloadJCVI VIGORTue, 08 Dec 2015 16:33:02 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r17/VIGOR3.r17.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r17/VIGOR3.r17.readme.txt/downloadJCVI VIGORTue, 08 Dec 2015 16:33:02 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r17/VIGOR3.r17.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/17/Added Chikungunya virus annotation capability, ...Paolo AmedeoTue, 08 Dec 2015 16:19:35 -0000https://sourceforge.net/p/jcvi-vigor/code/17/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r16/VIGOR3.r16.readme.txt/downloadJCVI VIGORTue, 01 Sep 2015 19:25:02 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r16/VIGOR3.r16.readme.txt/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r16/VIGOR3.r16.tgz/downloadJCVI VIGORTue, 01 Sep 2015 19:25:02 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r16/VIGOR3.r16.tgz/downloadhttps://sourceforge.net/p/jcvi-vigor/code/16/Corrected bug that made Vigor crashing when usi...Paolo AmedeoTue, 01 Sep 2015 18:49:09 -0000https://sourceforge.net/p/jcvi-vigor/code/16/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r15/VIGOR3.r15.tgz/downloadJCVI VIGORThu, 20 Aug 2015 15:21:02 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r15/VIGOR3.r15.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r15/VIGOR3.r15.readme.txt/downloadJCVI VIGORThu, 20 Aug 2015 15:21:02 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r15/VIGOR3.r15.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/15/Updated the README filePaolo AmedeoThu, 20 Aug 2015 15:09:58 -0000https://sourceforge.net/p/jcvi-vigor/code/15/https://sourceforge.net/p/jcvi-vigor/code/14/Updated Obunya virus database and corrected the...Paolo AmedeoThu, 20 Aug 2015 15:03:12 -0000https://sourceforge.net/p/jcvi-vigor/code/14/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r13/VIGOR3.r13.readme.txt/downloadJCVI VIGORThu, 13 Aug 2015 19:57:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r13/VIGOR3.r13.readme.txt/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r13/VIGOR3.r13.tgz/downloadJCVI VIGORThu, 13 Aug 2015 19:56:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r13/VIGOR3.r13.tgz/downloadhttps://sourceforge.net/p/jcvi-vigor/code/13/Small changes in the code to tolerate Blast cra...Paolo AmedeoThu, 13 Aug 2015 18:41:20 -0000https://sourceforge.net/p/jcvi-vigor/code/13/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r12/VIGOR3.r12.tgz/downloadJCVI VIGORFri, 07 Aug 2015 23:36:02 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r12/VIGOR3.r12.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r12/VIGOR3.r12.readme.txt/downloadJCVI VIGORFri, 07 Aug 2015 23:36:02 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r12/VIGOR3.r12.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/12/Cleaned up some more unused code and improved t...Paolo AmedeoFri, 07 Aug 2015 23:15:19 -0000https://sourceforge.net/p/jcvi-vigor/code/12/https://sourceforge.net/p/jcvi-vigor/code/11/Added West Nile Virus Lineage I (wnvI_db), Line...Paolo AmedeoThu, 06 Aug 2015 23:18:42 -0000https://sourceforge.net/p/jcvi-vigor/code/11/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r10/VIGOR3.r10.tgz/downloadJCVI VIGORTue, 20 Jan 2015 17:13:31 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r10/VIGOR3.r10.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r10/VIGOR3.r10.readme.txt/downloadJCVI VIGORTue, 20 Jan 2015 17:13:31 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r10/VIGOR3.r10.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/10/Added the Canine Distemper Virus database (cdv_...1Tue, 20 Jan 2015 16:47:58 -0000https://sourceforge.net/p/jcvi-vigor/code/10/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r9/VIGOR3.r9.tgz/downloadJCVI VIGORWed, 26 Nov 2014 19:30:05 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r9/VIGOR3.r9.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r9/VIGOR3.r9.readme.txt/downloadJCVI VIGORWed, 26 Nov 2014 19:30:05 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r9/VIGOR3.r9.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/9/Cleaned up the code by commenting out unused fu...Paolo AmedeoWed, 26 Nov 2014 19:13:00 -0000https://sourceforge.net/p/jcvi-vigor/code/9/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r8/VIGOR3.r8.tgz/downloadJCVI VIGORThu, 25 Sep 2014 21:15:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r8/VIGOR3.r8.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r8/VIGOR3.r8.readme.txt/downloadJCVI VIGORThu, 25 Sep 2014 21:15:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r8/VIGOR3.r8.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/8/Corrected path to command in VIGOR3.pm and upda...Paolo AmedeoThu, 25 Sep 2014 20:26:07 -0000https://sourceforge.net/p/jcvi-vigor/code/8/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r7/VIGOR3.r7.readme.txt/downloadJCVI VIGORThu, 29 May 2014 18:08:04 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r7/VIGOR3.r7.readme.txt/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r7/VIGOR3.r7.tgz/downloadJCVI VIGORThu, 29 May 2014 18:08:04 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r7/VIGOR3.r7.tgz/downloadhttps://sourceforge.net/p/jcvi-vigor/code/7/VIGOR3.pm - Fixed bug of 3'-partial genes not b...Paolo AmedeoThu, 29 May 2014 17:50:31 -0000https://sourceforge.net/p/jcvi-vigor/code/7/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r6/VIGOR3.r6.tgz/downloadJCVI VIGORThu, 15 May 2014 20:48:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r6/VIGOR3.r6.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r6/VIGOR3.r6.readme.txt/downloadJCVI VIGORThu, 15 May 2014 20:48:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r6/VIGOR3.r6.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/code/6/VIGOR3.pm - gene_name_to_locus() Corrected the ...Paolo AmedeoThu, 15 May 2014 20:36:32 -0000https://sourceforge.net/p/jcvi-vigor/code/6/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r5/VIGOR3.r5.readme.txt/downloadJCVI VIGORMon, 12 May 2014 21:24:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r5/VIGOR3.r5.readme.txt/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r5/VIGOR3.r5.tgz/downloadJCVI VIGORMon, 12 May 2014 21:24:03 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r5/VIGOR3.r5.tgz/downloadhttps://sourceforge.net/p/jcvi-vigor/code/5/Updated cov_g1b and flua databases, Corrected t...Paolo AmedeoMon, 12 May 2014 21:07:28 -0000https://sourceforge.net/p/jcvi-vigor/code/5/https://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r4/VIGOR3.r4.tgz/downloadJCVI VIGORThu, 08 May 2014 17:35:05 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r4/VIGOR3.r4.tgz/downloadhttps://sourceforge.nethttp%3A//sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r4/VIGOR3.r4.readme.txt/downloadJCVI VIGORThu, 08 May 2014 17:35:05 -0000http://sourceforge.net/projects/jcvi-vigor/files/VIGOR3.r4/VIGOR3.r4.readme.txt/downloadhttps://sourceforge.net/p/jcvi-vigor/tickets/5/?limit=25#d317Bug fixed with the latest code update. PaoloPaolo AmedeoThu, 08 May 2014 15:23:20 -0000https://sourceforge.net/p/jcvi-vigor/tickets/5/?limit=25#d317https://sourceforge.net/p/jcvi-vigor/tickets/5/bug in subsequence subroutine (VIGOR3.pm)Paolo AmedeoThu, 08 May 2014 15:23:20 -0000https://sourceforge.net/p/jcvi-vigor/tickets/5/https://sourceforge.net/p/jcvi-vigor/code/4/VIGOR3.pmPaolo AmedeoThu, 08 May 2014 15:19:47 -0000https://sourceforge.net/p/jcvi-vigor/code/4/https://sourceforge.net/p/jcvi-vigor/tickets/10/many changes to allow exons to span origin in circular genomesJeffrey HooverWed, 07 May 2014 18:57:14 -0000https://sourceforge.net/p/jcvi-vigor/tickets/10/https://sourceforge.net/p/jcvi-vigor/tickets/9/?limit=25#6b93see JCVI development directory for code fixJeffrey HooverMon, 05 May 2014 17:53:47 -0000https://sourceforge.net/p/jcvi-vigor/tickets/9/?limit=25#6b93https://sourceforge.net/p/jcvi-vigor/tickets/9/improved handling of wraparound coordinates on circular genomesJeffrey HooverMon, 05 May 2014 17:53:01 -0000https://sourceforge.net/p/jcvi-vigor/tickets/9/https://sourceforge.net/p/jcvi-vigor/tickets/8/Revised handling of non-canonical splicing to be consistent with database documentation.Jeffrey HooverTue, 29 Apr 2014 13:01:07 -0000https://sourceforge.net/p/jcvi-vigor/tickets/8/https://sourceforge.net/p/jcvi-vigor/tickets/7/-G option doesn't work and should be deprecated, missing symbolic link for external program cd-hitJeffrey HooverMon, 28 Apr 2014 13:48:05 -0000https://sourceforge.net/p/jcvi-vigor/tickets/7/https://sourceforge.net/p/jcvi-vigor/tickets/6/?limit=25#0350also need to insert this code: # format and return exons my @tmp = shift @exons;...Jeffrey HooverFri, 25 Apr 2014 14:15:08 -0000https://sourceforge.net/p/jcvi-vigor/tickets/6/?limit=25#0350https://sourceforge.net/p/jcvi-vigor/tickets/6/recommended hack to deal with mis-annotated references where ribosomal slippage significantly misplacedJeffrey HooverFri, 25 Apr 2014 13:31:50 -0000https://sourceforge.net/p/jcvi-vigor/tickets/6/https://sourceforge.net/p/jcvi-vigor/tickets/5/bug in subsequence subroutine (VIGOR3.pm)Jeffrey HooverFri, 25 Apr 2014 12:03:43 -0000https://sourceforge.net/p/jcvi-vigor/tickets/5/