https://sourceforge.net/p/mimodd/activity/Recent activity for MiModDenSun, 13 Mar 2022 08:16:45 -0000https://sourceforge.net/p/mimodd/source/ci/5b7f2b200362604cf5995004d369014af0982d39/Merge rebase EFF allele and build fixes into stableWolfgang MaierSun, 13 Mar 2022 08:16:45 -0000https://sourceforge.net/p/mimodd/source/ci/5b7f2b200362604cf5995004d369014af0982d39/https://sourceforge.net/p/mimodd/source/ci/cbaec6730e5538739c6e89ba611a0c7317a7034c/Include cached Galaxy test-data in distributionWolfgang MaierSun, 13 Mar 2022 08:08:51 -0000https://sourceforge.net/p/mimodd/source/ci/cbaec6730e5538739c6e89ba611a0c7317a7034c/https://sourceforge.net/p/mimodd/source/ci/91be5cb218315004e4aa162dde3a82ca7789d991/Fix symlinks by specifying relative targetsWolfgang MaierWed, 07 Apr 2021 17:58:23 -0000https://sourceforge.net/p/mimodd/source/ci/91be5cb218315004e4aa162dde3a82ca7789d991/https://sourceforge.net/p/mimodd/source/ci/509ef38e237b01db4de47ba897a992e0627cd224/Add more tests for variant_annotation moduleWolfgang MaierWed, 02 Dec 2020 21:14:56 -0000https://sourceforge.net/p/mimodd/source/ci/509ef38e237b01db4de47ba897a992e0627cd224/https://sourceforge.net/p/mimodd/tickets/112/fix wrong alleles in variant reportsWolfgang MaierWed, 02 Dec 2020 16:19:44 -0000https://sourceforge.net/p/mimodd/tickets/112/https://sourceforge.net/p/mimodd/tickets/112/?limit=25#f458fixed by [2482ec]Wolfgang MaierWed, 02 Dec 2020 16:19:44 -0000https://sourceforge.net/p/mimodd/tickets/112/?limit=25#f458https://sourceforge.net/p/mimodd/source/ci/2482ec85691a7e24cc3ee1248bd0e4c9383d8bb7/Reverse-complement EFF allele when reverting ALT during rebaseWolfgang MaierWed, 02 Dec 2020 16:15:55 -0000https://sourceforge.net/p/mimodd/source/ci/2482ec85691a7e24cc3ee1248bd0e4c9383d8bb7/https://sourceforge.net/p/mimodd/tickets/119/mimodd reheader bug with renaming ref sequences in BAMWolfgang MaierFri, 30 Oct 2020 10:15:14 -0000https://sourceforge.net/p/mimodd/tickets/119/https://sourceforge.net/p/mimodd/tickets/112/?limit=25#4ad8correction to the correction: the real cause of the issue is that the SnpEff effect allele (which SnpEff writes correctly in every case) can get out of sync with the ALT column during rebasing (which may rv-complement ALT alleles, but doesn't know about SnpEff effects fields).Wolfgang MaierFri, 09 Oct 2020 16:55:48 -0000https://sourceforge.net/p/mimodd/tickets/112/?limit=25#4ad8https://sourceforge.net/p/mimodd/tickets/112/fix wrong alleles in variant reportsWolfgang MaierThu, 08 Oct 2020 15:35:54 -0000https://sourceforge.net/p/mimodd/tickets/112/https://sourceforge.net/p/mimodd/tickets/118/variant call tool should expose more samtools/bcftools optionsWolfgang MaierMon, 25 May 2020 15:25:53 -0000https://sourceforge.net/p/mimodd/tickets/118/https://sourceforge.net/p/mimodd/source/ci/19abfb9a70ecf618d808ea30c35b1df55e3165aa/Merge Snap and vcf-filter fixes into stableWolfgang MaierMon, 18 May 2020 08:22:08 -0000https://sourceforge.net/p/mimodd/source/ci/19abfb9a70ecf618d808ea30c35b1df55e3165aa/https://sourceforge.net/p/mimodd/tickets/100/allow unspecified start or stop in vcf-filter region filtersWolfgang MaierFri, 15 May 2020 19:57:46 -0000https://sourceforge.net/p/mimodd/tickets/100/https://sourceforge.net/p/mimodd/source/ci/86b33acb35b94017d4930c0ee6fab3b4ef0fc7a7/Fix vcf-filter Galaxy wrapper region filter handlingWolfgang MaierFri, 15 May 2020 19:56:22 -0000https://sourceforge.net/p/mimodd/source/ci/86b33acb35b94017d4930c0ee6fab3b4ef0fc7a7/https://sourceforge.net/p/mimodd/tickets/117/First-class sanitize toolWolfgang MaierThu, 14 May 2020 16:44:41 -0000https://sourceforge.net/p/mimodd/tickets/117/https://sourceforge.net/p/mimodd/tickets/62/enable variant filtering based on REF and ALT sequences and on snpEff annotationsWolfgang MaierThu, 14 May 2020 16:37:10 -0000https://sourceforge.net/p/mimodd/tickets/62/https://sourceforge.net/p/mimodd/tickets/73/batch-level command line options for snap-batchWolfgang MaierThu, 14 May 2020 16:36:42 -0000https://sourceforge.net/p/mimodd/tickets/73/https://sourceforge.net/p/mimodd/tickets/76/variant filtering mini-language to allow for OR-based filtersWolfgang MaierThu, 14 May 2020 16:36:00 -0000https://sourceforge.net/p/mimodd/tickets/76/https://sourceforge.net/p/mimodd/tickets/80/remove snap-batch toolWolfgang MaierThu, 14 May 2020 16:35:19 -0000https://sourceforge.net/p/mimodd/tickets/80/https://sourceforge.net/p/mimodd/source/ci/6e93a0a6c9f959a0548d87459ee1bfe999eb9fb5/Clean up SNAPLib sourceWolfgang MaierThu, 14 May 2020 12:17:05 -0000https://sourceforge.net/p/mimodd/source/ci/6e93a0a6c9f959a0548d87459ee1bfe999eb9fb5/https://sourceforge.net/p/mimodd/source/ci/30d8afc2872a4c52d6117d07ea9b50671242daac/Fix two SNAP compile warnings and snap index crash on modern OSesWolfgang MaierThu, 14 May 2020 12:14:33 -0000https://sourceforge.net/p/mimodd/source/ci/30d8afc2872a4c52d6117d07ea9b50671242daac/https://sourceforge.net/p/mimodd/source/ci/321346699f1c60d06e354cf2471cd23c9d645256/Merge updated info tool docs into stableWolfgang MaierThu, 14 May 2020 10:06:49 -0000https://sourceforge.net/p/mimodd/source/ci/321346699f1c60d06e354cf2471cd23c9d645256/https://sourceforge.net/p/mimodd/source/ci/04177e6589aceaceb0967f0ea56af405b11409cb/Document info tool enhancementsWolfgang MaierThu, 14 May 2020 09:59:26 -0000https://sourceforge.net/p/mimodd/source/ci/04177e6589aceaceb0967f0ea56af405b11409cb/https://sourceforge.net/p/mimodd/source/ci/a2601abdc9c573f5cd1850af8b018510126821c2/Merge v0.2 info tool and wrapper enhancements into stableWolfgang MaierThu, 14 May 2020 09:25:45 -0000https://sourceforge.net/p/mimodd/source/ci/a2601abdc9c573f5cd1850af8b018510126821c2/https://sourceforge.net/p/mimodd/source/ci/6169e87e9cb80e398d4a7293598d8458eebab897/Adjust docs version to match package version exactlyWolfgang MaierThu, 14 May 2020 09:17:11 -0000https://sourceforge.net/p/mimodd/source/ci/6169e87e9cb80e398d4a7293598d8458eebab897/https://sourceforge.net/p/mimodd/source/ci/1cfa4097c4717fcb23203e06fe93b03ddebc674b/Include full Galaxy data assets in package installWolfgang MaierWed, 13 May 2020 21:49:08 -0000https://sourceforge.net/p/mimodd/source/ci/1cfa4097c4717fcb23203e06fe93b03ddebc674b/https://sourceforge.net/p/mimodd/source/ci/2b041e6257e230381fe685f9fe0fc28c50b56163/Bump package versionWolfgang MaierWed, 13 May 2020 21:34:35 -0000https://sourceforge.net/p/mimodd/source/ci/2b041e6257e230381fe685f9fe0fc28c50b56163/https://sourceforge.net/p/mimodd/source/ci/87aba3f5ba0cfe2143e392300eecce5fdb2dfdce/Pull in Galaxy toolshed-related assets from wrapper repoWolfgang MaierWed, 13 May 2020 21:27:48 -0000https://sourceforge.net/p/mimodd/source/ci/87aba3f5ba0cfe2143e392300eecce5fdb2dfdce/https://sourceforge.net/p/mimodd/source/ci/2da71c8bb8b902f02e49e7d976e7d9386ba24a79/Improve file info Galaxy tool wrapperWolfgang MaierWed, 13 May 2020 21:27:48 -0000https://sourceforge.net/p/mimodd/source/ci/2da71c8bb8b902f02e49e7d976e7d9386ba24a79/https://sourceforge.net/p/mimodd/source/ci/bbf7d1e792275cdd006363ab66bd583dfc81f2ff/Start work on Galaxy wrapper updatesWolfgang MaierWed, 13 May 2020 21:27:48 -0000https://sourceforge.net/p/mimodd/source/ci/bbf7d1e792275cdd006363ab66bd583dfc81f2ff/https://sourceforge.net/p/mimodd/source/ci/82e8904bcccec9f5a1d350417dcdb907ffa971bd/Support new BED output format of mimodd infoWolfgang MaierWed, 13 May 2020 21:27:48 -0000https://sourceforge.net/p/mimodd/source/ci/82e8904bcccec9f5a1d350417dcdb907ffa971bd/https://sourceforge.net/p/mimodd/source/ci/ceb44211c8dd72234837b9f294a41c845734876b/Replace redundant copy of Galaxy tool_config with symlinkWolfgang MaierWed, 13 May 2020 21:27:48 -0000https://sourceforge.net/p/mimodd/source/ci/ceb44211c8dd72234837b9f294a41c845734876b/https://sourceforge.net/p/mimodd/tickets/114/Titles of datasets created with File Information toolWolfgang MaierWed, 13 May 2020 16:42:16 -0000https://sourceforge.net/p/mimodd/tickets/114/https://sourceforge.net/p/mimodd/tickets/114/?limit=25#9281fixed by https://github.com/wm75/mimodd_galaxy_wrappers/commit/d78d5783eea5d3cc7ccdb16d6ae3a11864beef2cWolfgang MaierWed, 13 May 2020 16:42:16 -0000https://sourceforge.net/p/mimodd/tickets/114/?limit=25#9281https://sourceforge.net/p/mimodd/source/ci/42151ab90d5fdd6061aa2b6ad088d0e921b64f4e/Add BED as fileinfo output formatWolfgang MaierTue, 12 May 2020 22:33:53 -0000https://sourceforge.net/p/mimodd/source/ci/42151ab90d5fdd6061aa2b6ad088d0e921b64f4e/https://sourceforge.net/p/mimodd/wiki/MiModD%2520on%2520public%2520Galaxy%2520servers/MiModD on public Galaxy serversWolfgang MaierFri, 14 Feb 2020 08:18:42 -0000https://sourceforge.net/p/mimodd/wiki/MiModD%20on%20public%20Galaxy%20servers/https://sourceforge.net/p/mimodd/tickets/107/prepare for ssl certificate expirationWolfgang MaierThu, 23 Jan 2020 13:44:27 -0000https://sourceforge.net/p/mimodd/tickets/107/https://sourceforge.net/p/mimodd/tickets/107/?limit=25#39f6could not reproduce, plus updated bundled certificate together with pip/setuptoolsWolfgang MaierThu, 23 Jan 2020 13:44:27 -0000https://sourceforge.net/p/mimodd/tickets/107/?limit=25#39f6https://sourceforge.net/p/mimodd/tickets/116/bundled pip is incompatible with python3.8Wolfgang MaierThu, 23 Jan 2020 13:42:46 -0000https://sourceforge.net/p/mimodd/tickets/116/https://sourceforge.net/p/mimodd/tickets/116/?limit=25#afe5resolved by upgrade of the bundled versions of pip and setuptools in changeset [a36bcf]Wolfgang MaierThu, 23 Jan 2020 13:42:46 -0000https://sourceforge.net/p/mimodd/tickets/116/?limit=25#afe5https://sourceforge.net/p/mimodd/source/ci/9d9d806169f45f83c88afe45dfd8b7ee3c90f1aa/Merge default into stableWolfgang MaierThu, 23 Jan 2020 12:20:44 -0000https://sourceforge.net/p/mimodd/source/ci/9d9d806169f45f83c88afe45dfd8b7ee3c90f1aa/https://sourceforge.net/p/mimodd/source/ci/6b11e0592e9c28441f90ac311064f41a4f76be54/Update testall script to test against all supported Python versionsWolfgang MaierThu, 23 Jan 2020 12:17:21 -0000https://sourceforge.net/p/mimodd/source/ci/6b11e0592e9c28441f90ac311064f41a4f76be54/https://sourceforge.net/p/mimodd/source/ci/dc2845a167bbd2c9355f120cb93cbb9315b7f4b3/Adjust and simplify import hierarchyWolfgang MaierThu, 23 Jan 2020 11:59:37 -0000https://sourceforge.net/p/mimodd/source/ci/dc2845a167bbd2c9355f120cb93cbb9315b7f4b3/https://sourceforge.net/p/mimodd/source/ci/75c3210288254b21c5ea4b44cedeb003ab45c2cb/Add .hgignore filesWolfgang MaierThu, 23 Jan 2020 11:59:37 -0000https://sourceforge.net/p/mimodd/source/ci/75c3210288254b21c5ea4b44cedeb003ab45c2cb/https://sourceforge.net/p/mimodd/source/ci/5ffbb6b0840fc52102179458a1b63b1a0aa7b067/Limit version downgrades to sane choicesWolfgang MaierWed, 22 Jan 2020 23:28:41 -0000https://sourceforge.net/p/mimodd/source/ci/5ffbb6b0840fc52102179458a1b63b1a0aa7b067/https://sourceforge.net/p/mimodd/source/ci/1c813d1851662879604afddd2ef9913adce3ff83/Fix newly introduced typoWolfgang MaierWed, 22 Jan 2020 22:12:48 -0000https://sourceforge.net/p/mimodd/source/ci/1c813d1851662879604afddd2ef9913adce3ff83/https://sourceforge.net/p/mimodd/source/ci/35e098915a6d33aef5a597097115aec158f80d97/Revert premature version bumpWolfgang MaierWed, 22 Jan 2020 21:59:50 -0000https://sourceforge.net/p/mimodd/source/ci/35e098915a6d33aef5a597097115aec158f80d97/https://sourceforge.net/p/mimodd/source/ci/a36bcf17170c3b07b8032ed0055ff85547e01d80/Update bundled pip and setuptoolsWolfgang MaierWed, 22 Jan 2020 21:47:38 -0000https://sourceforge.net/p/mimodd/source/ci/a36bcf17170c3b07b8032ed0055ff85547e01d80/https://sourceforge.net/p/mimodd/source/ci/15d97c74dfa3f7490378f18f1f8b42f2cc18e44d/Update Galaxy installation instructions to make use of Python 3Wolfgang MaierTue, 21 Jan 2020 21:28:40 -0000https://sourceforge.net/p/mimodd/source/ci/15d97c74dfa3f7490378f18f1f8b42f2cc18e44d/https://sourceforge.net/p/mimodd/source/ci/e6194ce5b36d2fd32604c2e0425fee36e362e434/Merge documentation into defaultWolfgang MaierTue, 21 Jan 2020 21:28:40 -0000https://sourceforge.net/p/mimodd/source/ci/e6194ce5b36d2fd32604c2e0425fee36e362e434/https://sourceforge.net/p/mimodd/source/ci/a398f04d5b593539def49fb80599741f27d4105f/Update Galaxy installation instructions to make use of Python 3Wolfgang MaierTue, 21 Jan 2020 21:28:40 -0000https://sourceforge.net/p/mimodd/source/ci/a398f04d5b593539def49fb80599741f27d4105f/https://sourceforge.net/p/mimodd/source/ci/da68be06c8f041cd3f7d617f803707177857ff7c/Removed tag doc0.1.9Wolfgang MaierTue, 21 Jan 2020 21:28:40 -0000https://sourceforge.net/p/mimodd/source/ci/da68be06c8f041cd3f7d617f803707177857ff7c/https://sourceforge.net/p/mimodd/source/ci/7c80a85decda703f037f711ee27bdb2c5f457c3f/Added tag doc0.1.9 for changeset da68be06c8f0Wolfgang MaierTue, 21 Jan 2020 21:28:40 -0000https://sourceforge.net/p/mimodd/source/ci/7c80a85decda703f037f711ee27bdb2c5f457c3f/https://sourceforge.net/p/mimodd/source/ci/d7e6692c23d8a6a59a81f89bface2cf6f67d758e/Update docs to reflect new dependency requirementsWolfgang MaierSat, 18 Jan 2020 23:22:14 -0000https://sourceforge.net/p/mimodd/source/ci/d7e6692c23d8a6a59a81f89bface2cf6f67d758e/https://sourceforge.net/p/mimodd/tickets/116/bundled pip is incompatible with python3.8AnonymousFri, 17 Jan 2020 20:22:39 -0000https://sourceforge.net/p/mimodd/tickets/116/https://sourceforge.net/p/mimodd/source/ci/806dc60c701e327da2782c812118507f26bf890a/Drop support for Python 3.3/3.4, make compatible with Python 3.7+Wolfgang MaierFri, 17 Jan 2020 16:37:09 -0000https://sourceforge.net/p/mimodd/source/ci/806dc60c701e327da2782c812118507f26bf890a/https://sourceforge.net/p/mimodd/source/ci/2babd177069688831accdf3c62bb44035df45bf7/Update ChangeLog and copyrightWolfgang MaierWed, 15 Jan 2020 15:55:19 -0000https://sourceforge.net/p/mimodd/source/ci/2babd177069688831accdf3c62bb44035df45bf7/https://sourceforge.net/p/mimodd/source/ci/4f170c13bd60cb8bf986c24e67dcdccc835da942/Handle "Operation not supported" as hardlink failure reasonWolfgang MaierWed, 15 Jan 2020 15:45:51 -0000https://sourceforge.net/p/mimodd/source/ci/4f170c13bd60cb8bf986c24e67dcdccc835da942/https://sourceforge.net/p/mimodd/source/ci/8a2fbe479259d786ae9a962fa483e628ddfe358f/Document current incompatibility with Python3.7.5 and beyondWolfgang MaierWed, 15 Jan 2020 15:01:08 -0000https://sourceforge.net/p/mimodd/source/ci/8a2fbe479259d786ae9a962fa483e628ddfe358f/https://sourceforge.net/p/mimodd/source/ci/237719e8dc7c930be224f04d554831326986f325/Update macOS version informationWolfgang MaierWed, 15 Jan 2020 15:01:08 -0000https://sourceforge.net/p/mimodd/source/ci/237719e8dc7c930be224f04d554831326986f325/https://sourceforge.net/p/mimodd/tickets/115/Fix for rpy2 3.x seriesWolfgang MaierWed, 15 Jan 2020 14:13:23 -0000https://sourceforge.net/p/mimodd/tickets/115/https://sourceforge.net/p/mimodd/tickets/115/?limit=25#279caddressed by [a4c951], which also restores R warnings output suppression for the 3.x series of rpy2Wolfgang MaierWed, 15 Jan 2020 14:13:23 -0000https://sourceforge.net/p/mimodd/tickets/115/?limit=25#279chttps://sourceforge.net/p/mimodd/tickets/115/Fix for rpy2 3.x seriesAnonymousWed, 15 Jan 2020 14:11:47 -0000https://sourceforge.net/p/mimodd/tickets/115/https://sourceforge.net/p/mimodd/source/ci/a4c95111f78bb992ebcc3e01087a65e968fe5718/Make compatible with 3.x series of rpy2Wolfgang MaierWed, 15 Jan 2020 14:04:05 -0000https://sourceforge.net/p/mimodd/source/ci/a4c95111f78bb992ebcc3e01087a65e968fe5718/https://sourceforge.net/p/mimodd/wiki/Welcome/WelcomeWolfgang MaierMon, 13 May 2019 13:14:44 -0000https://sourceforge.net/p/mimodd/wiki/Welcome/https://sourceforge.net/p/mimodd/tickets/114/Titles of datasets created with File Information toolWolfgang MaierMon, 15 Apr 2019 12:17:33 -0000https://sourceforge.net/p/mimodd/tickets/114/https://sourceforge.net/p/mimodd/tickets/113/Report Variants Galaxy wrapper should generate plain html datasetsAnonymousMon, 18 Mar 2019 19:49:55 -0000https://sourceforge.net/p/mimodd/tickets/113/https://sourceforge.net/p/mimodd/tickets/112/fix remap rv strand bugWolfgang MaierThu, 14 Mar 2019 22:02:19 -0000https://sourceforge.net/p/mimodd/tickets/112/https://sourceforge.net/p/mimodd/tickets/111/handle freebayes-generated vcfsWolfgang MaierThu, 14 Mar 2019 21:50:04 -0000https://sourceforge.net/p/mimodd/tickets/111/https://sourceforge.net/p/mimodd/tickets/110/offer mapped reads postprocessingWolfgang MaierThu, 14 Mar 2019 21:37:55 -0000https://sourceforge.net/p/mimodd/tickets/110/https://sourceforge.net/p/mimodd/tickets/101/make annotate tool robust against very verbose snpEff outputWolfgang MaierThu, 14 Mar 2019 21:27:37 -0000https://sourceforge.net/p/mimodd/tickets/101/https://sourceforge.net/p/mimodd/tickets/107/prepare for ssl certificate expirationWolfgang MaierThu, 14 Mar 2019 21:27:04 -0000https://sourceforge.net/p/mimodd/tickets/107/https://sourceforge.net/p/mimodd/tickets/108/teach tool wrappers about GALAXY_MEMORY_MBWolfgang MaierThu, 14 Mar 2019 21:26:38 -0000https://sourceforge.net/p/mimodd/tickets/108/https://sourceforge.net/p/mimodd/tickets/109/sample dropdown select menusWolfgang MaierThu, 14 Mar 2019 21:26:10 -0000https://sourceforge.net/p/mimodd/tickets/109/https://sourceforge.net/p/mimodd/tickets/8/tool-specific temporary file directoriesWolfgang MaierThu, 14 Mar 2019 21:25:10 -0000https://sourceforge.net/p/mimodd/tickets/8/https://sourceforge.net/p/mimodd/tickets/41/internal htslib/samtools/bcftools updateWolfgang MaierThu, 14 Mar 2019 21:22:56 -0000https://sourceforge.net/p/mimodd/tickets/41/https://sourceforge.net/p/mimodd/tickets/46/rethink behaviour of pysamtools.header on empty outputWolfgang MaierThu, 14 Mar 2019 21:21:43 -0000https://sourceforge.net/p/mimodd/tickets/46/https://sourceforge.net/p/mimodd/tickets/19/enable autocompletion of mimodd subcommands in shellWolfgang MaierThu, 14 Mar 2019 21:20:18 -0000https://sourceforge.net/p/mimodd/tickets/19/https://sourceforge.net/p/mimodd/tickets/4/Support for SNAP v1.0Wolfgang MaierThu, 14 Mar 2019 21:19:42 -0000https://sourceforge.net/p/mimodd/tickets/4/https://sourceforge.net/p/mimodd/tickets/38/keep custom rginfo lines in vcf headers in synchrony with sample namesWolfgang MaierThu, 14 Mar 2019 21:15:57 -0000https://sourceforge.net/p/mimodd/tickets/38/https://sourceforge.net/p/mimodd/tickets/38/keep custom rginfo lines in vcf headers in synchrony with sample namesWolfgang MaierThu, 14 Mar 2019 21:15:33 -0000https://sourceforge.net/p/mimodd/tickets/38/https://sourceforge.net/p/mimodd/tickets/56/clean up code base after 0.1.6.1 pyvcf changesWolfgang MaierThu, 14 Mar 2019 21:14:38 -0000https://sourceforge.net/p/mimodd/tickets/56/https://sourceforge.net/p/mimodd/tickets/78/new RVD (relative variant density) mode for map toolWolfgang MaierThu, 14 Mar 2019 21:11:12 -0000https://sourceforge.net/p/mimodd/tickets/78/https://sourceforge.net/p/mimodd/tickets/42/handle uninstall/reinstallWolfgang MaierThu, 14 Mar 2019 21:10:28 -0000https://sourceforge.net/p/mimodd/tickets/42/https://sourceforge.net/p/mimodd/tickets/42/handle uninstall/reinstallWolfgang MaierThu, 14 Mar 2019 21:10:07 -0000https://sourceforge.net/p/mimodd/tickets/42/https://sourceforge.net/p/mimodd/tickets/49/FDR filter for delcallWolfgang MaierThu, 14 Mar 2019 21:08:01 -0000https://sourceforge.net/p/mimodd/tickets/49/https://sourceforge.net/p/mimodd/tickets/96/?limit=25#5a3edealing with ANN format remains to be implemented, but should be part of v0.2Wolfgang MaierThu, 14 Mar 2019 21:07:21 -0000https://sourceforge.net/p/mimodd/tickets/96/?limit=25#5a3ehttps://sourceforge.net/p/mimodd/tickets/105/enable deletion calling for only some of the samples in a BCF fileWolfgang MaierThu, 14 Mar 2019 21:05:14 -0000https://sourceforge.net/p/mimodd/tickets/105/https://sourceforge.net/p/mimodd/tickets/9/scaffold-independent parallelization of variant callingWolfgang MaierThu, 14 Mar 2019 21:04:30 -0000https://sourceforge.net/p/mimodd/tickets/9/https://sourceforge.net/p/mimodd/tickets/84/add anno_links to vectorbaseWolfgang MaierThu, 14 Mar 2019 21:03:43 -0000https://sourceforge.net/p/mimodd/tickets/84/https://sourceforge.net/p/mimodd/tickets/47/OS X wheels should ship with working copy of bwa as an alternative alignerWolfgang MaierThu, 14 Mar 2019 21:02:57 -0000https://sourceforge.net/p/mimodd/tickets/47/https://sourceforge.net/p/mimodd/tickets/72/make pysamtools functions return running processes that can be waited forWolfgang MaierThu, 14 Mar 2019 21:01:58 -0000https://sourceforge.net/p/mimodd/tickets/72/https://sourceforge.net/p/mimodd/tickets/90/convert and split vcf/bcf filesWolfgang MaierThu, 14 Mar 2019 21:01:06 -0000https://sourceforge.net/p/mimodd/tickets/90/https://sourceforge.net/p/mimodd/tickets/87/extend covstats toolWolfgang MaierThu, 14 Mar 2019 21:00:10 -0000https://sourceforge.net/p/mimodd/tickets/87/https://sourceforge.net/p/mimodd/tickets/109/sample dropdown select menusWolfgang MaierThu, 14 Mar 2019 20:56:01 -0000https://sourceforge.net/p/mimodd/tickets/109/https://sourceforge.net/p/mimodd/tickets/108/teach tool wrappers about GALAXY_MEMORY_MBWolfgang MaierTue, 27 Mar 2018 09:43:22 -0000https://sourceforge.net/p/mimodd/tickets/108/https://sourceforge.net/p/mimodd/wiki/MiModD%2520on%2520public%2520Galaxy%2520servers/MiModD on public Galaxy serversWolfgang MaierFri, 23 Mar 2018 19:54:02 -0000https://sourceforge.net/p/mimodd/wiki/MiModD%20on%20public%20Galaxy%20servers/https://sourceforge.net/p/mimodd/tickets/101/make annotate tool robust against very verbose snpEff outputWolfgang MaierFri, 23 Mar 2018 09:09:13 -0000https://sourceforge.net/p/mimodd/tickets/101/https://sourceforge.net/p/mimodd/tickets/107/prepare for ssl certificate expirationWolfgang MaierFri, 23 Mar 2018 09:08:10 -0000https://sourceforge.net/p/mimodd/tickets/107/https://sourceforge.nethttps%3A//sourceforge.net/projects/mimodd/files/MiModD-0.1.9/README.txt/downloadMiModDThu, 22 Mar 2018 15:34:03 -0000https://sourceforge.net/projects/mimodd/files/MiModD-0.1.9/README.txt/download