PBSuite Blog

Honey.py force
Added parser helpers for the Force output format as well as a 'genotyper'
Improved spot forcing by chaninging --minIns to --minErr. Now 'twilight' deletions aren't incorrectly forced
Added --bedPE Support which includes a couple of Bed Objects... which probably need to be moved to utils/FileHandlers.py

recallSpots.py
Fixed the code so it should actually work

HSpots.py
minor code cleaning

Jelly.py output
Fixed lower-casing of PBJelly added sequence
Added trim information to debugging log
Fixed 'mySpanScore' bug

Jelly.py
Added .fasta/.fastq extension checking for inputs in Protocol

Jelly.py collection
Added safer .fasta/.fastq parser choosing

Utils
quickN50.py - Made the output report more attractive
FileHandlers.py - Added to lower/upper methods