https://sourceforge.net/p/pb-jelly/discussion/pbjtiks/thread/d6b7361b/Recent posts to PBJelly Output StageenTue, 12 Sep 2017 22:15:34 -0000https://sourceforge.net/p/pb-jelly/discussion/pbjtiks/thread/d6b7361b/?limit=25#ab61<div class="markdown_content"><p>I can't help you estimate how long it'll take. Hopefully it's done by now?<br/> Related: <a href="https://sourceforge.net/p/pb-jelly/tickets/6/">https://sourceforge.net/p/pb-jelly/tickets/6/</a></p></div>Adam EnglishTue, 12 Sep 2017 22:15:34 -0000https://sourceforge.netef0c5c381d64622cb036dcbad7793e1030574dc7https://sourceforge.net/p/pb-jelly/discussion/pbjtiks/thread/d6b7361b/?limit=25#2e6f<div class="markdown_content"><p>I am trying to assemble a 2.5GB genome. I was able to complete Steps setup, mapping, support, extraction and assemble steps in about 4 days using about 10 nodes - 300 Cores. I started running PBJelly output step , It seems to be running on a single Node with 70 cores and 1 TB RAM, althought the load is little low. the output log hasnt got updated from yesterday. I think they are about 1600K Folders in the assembly folder. Is there an estimate time it would take to complete the output stage? Below is the tail of the output that was last updated- Many Thanks. I do see a file gap_fill_status.txt that completed. Apart from that nothing much. I would appreciate if we can estimate how much time it would take for the final step to complete. </p> <p>2017-08-28 19:39:35,039 <span>[DEBUG]</span> <span>['m170210_121445_00120_c101079682550000001823237802241734_s1_p0/9669/2781_7102']</span> gives evidence ref0000371e3 -&gt; ref0000371e5<br/> 2017-08-28 19:39:35,275 <span>[INFO]</span> Removing Poorly Supported Edges<br/> 2017-08-28 19:41:02,891 <span>[INFO]</span> PreFilter: 25516 subGraphs</p></div>RAKESHTue, 29 Aug 2017 21:57:42 -0000https://sourceforge.net35a66c87b1dd8ffb596ee408c06a8928db17e9a9