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<rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Activity for SysBioTK</title><link>https://sourceforge.net/p/sysbiotk/activity/</link><description>Recent activity for SysBioTK</description><language>en</language><lastBuildDate>Mon, 06 Jun 2022 17:42:19 -0000</lastBuildDate><item><title>Cristóvão da Cruz e Silva committed [b62c92]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/b62c92288a11b26c10e6bfbc819298efd24186d6/</link><description>Fixed for changed behaviour of urllib and removed e-mail... people should set their own</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão da Cruz e Silva</dc:creator><pubDate>Mon, 06 Jun 2022 17:42:19 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/b62c92288a11b26c10e6bfbc819298efd24186d6/</guid></item><item><title>Cristovao B da Cruz e Silva committed [4ac742]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/4ac742bff1bc2f29aa95587cdab078b1b6846ef9/</link><description>Fixed path to xls file</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 17:42:15 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/4ac742bff1bc2f29aa95587cdab078b1b6846ef9/</guid></item><item><title>Cristovao B da Cruz e Silva committed [9b391e]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/9b391eaf3b70deb953ab82a89a85aa060521594d/</link><description>Fixed path to pickle</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 17:41:34 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/9b391eaf3b70deb953ab82a89a85aa060521594d/</guid></item><item><title>Cristovao B da Cruz e Silva committed [e41015]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/e41015f87f49f2d9a67dcf442e8923857f6547aa/</link><description>Added the Synapse example</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 17:00:43 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/e41015f87f49f2d9a67dcf442e8923857f6547aa/</guid></item><item><title>Cristovao B da Cruz e Silva committed [d14207]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/d1420728a73eb6e5996ecf5acbc208edb027ae7c/</link><description>Updated email in copyright notice</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 16:58:57 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/d1420728a73eb6e5996ecf5acbc208edb027ae7c/</guid></item><item><title>Cristovao B da Cruz e Silva committed [5afbbd]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/5afbbdaf5d8bed7bb177baa5df77b2f16e57a081/</link><description>Updated email in license file</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 16:58:57 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/5afbbdaf5d8bed7bb177baa5df77b2f16e57a081/</guid></item><item><title>Cristovao B da Cruz e Silva committed [3d7514]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/3d751406ce51445d227f7e47dfd8851ab23985c6/</link><description>Added details about the manuscript the example comes from</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 16:58:57 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/3d751406ce51445d227f7e47dfd8851ab23985c6/</guid></item><item><title>Cristovao B da Cruz e Silva committed [91245a]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/91245a07626ef75884dcefe306a94529d24b585c/</link><description>Added readme file for the examples</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 16:37:37 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/91245a07626ef75884dcefe306a94529d24b585c/</guid></item><item><title>Cristovao B da Cruz e Silva committed [6576d7]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/6576d76b6bdc9eb9c7c39e86e37ef094519b202f/</link><description>Added a function to perform a statistical analysis on the GO</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 14:55:00 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/6576d76b6bdc9eb9c7c39e86e37ef094519b202f/</guid></item><item><title>Cristovao B da Cruz e Silva committed [88f202]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/88f202fa650551d14f4625ff4deda0429106a310/</link><description>Added a function to return a StatAnalysis object of the data in the DB. FOr fine grained control of the statistical analysis being performed.</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 14:55:00 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/88f202fa650551d14f4625ff4deda0429106a310/</guid></item><item><title>Cristovao B da Cruz e Silva committed [395a22]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/395a22283a203451e13d6df0b183b7bb49229ac4/</link><description>Added the possibility to output specific function to the excel table.</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 14:55:00 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/395a22283a203451e13d6df0b183b7bb49229ac4/</guid></item><item><title>Cristovao B da Cruz e Silva committed [5e2a9a]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/5e2a9ac1d26905f366f08ae228e4354cfc015e14/</link><description>Added a function to rename assays</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 14:55:00 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/5e2a9ac1d26905f366f08ae228e4354cfc015e14/</guid></item><item><title>Cristovao B da Cruz e Silva committed [d3948a]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/d3948add9a712594589c3d3dd840aac45e874543/</link><description>Added function to filter protein lists on the assays</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 14:55:00 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/d3948add9a712594589c3d3dd840aac45e874543/</guid></item><item><title>Cristovao B da Cruz e Silva committed [d75f31]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/d75f315fba7e43b23bafc82d8ef8601c121b97ed/</link><description>Added a function to retrieve a feature of a given protein for a given assay</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 14:55:00 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/d75f315fba7e43b23bafc82d8ef8601c121b97ed/</guid></item><item><title>Cristovao B da Cruz e Silva committed [4a4388]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/4a4388c4d7442ab6aeef2194d533eefaed960da1/</link><description>Added a function to filter DB proteins using a provided accession list</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 14:55:00 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/4a4388c4d7442ab6aeef2194d533eefaed960da1/</guid></item><item><title>Cristovao B da Cruz e Silva committed [9b2fb0]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/9b2fb0e12a9a2b0413a4caeb1534854ed62e4e7f/</link><description>Added a function to build a map of proteins and assays for a given feature</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 14:55:00 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/9b2fb0e12a9a2b0413a4caeb1534854ed62e4e7f/</guid></item><item><title>Cristovao B da Cruz e Silva committed [6b241a]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/6b241ab57c67d8d03d0447940ae249b1736da19c/</link><description>Allowed makeGOGraph to output multiple types</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 13:22:24 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/6b241ab57c67d8d03d0447940ae249b1736da19c/</guid></item><item><title>Cristovao B da Cruz e Silva committed [4f071c]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/4f071cde511f3b12f501f3de0dfc202b48bcfef3/</link><description>Added function to renormalize two lists of numbers together</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 13:22:24 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/4f071cde511f3b12f501f3de0dfc202b48bcfef3/</guid></item><item><title>Cristovao B da Cruz e Silva committed [c75081]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/c750816fd5c0371e9540e38b9980481372e961e9/</link><description>Added a class to manage the statiscal analysis</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 13:22:24 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/c750816fd5c0371e9540e38b9980481372e961e9/</guid></item><item><title>Cristovao B da Cruz e Silva committed [2d30b9]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/2d30b90ac456dc45d148a51004fd574808a2434e/</link><description>Updated filter assays for more control and more detailed reporting</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 13:22:24 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/2d30b90ac456dc45d148a51004fd574808a2434e/</guid></item><item><title>Cristovao B da Cruz e Silva committed [6d5646]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/6d564648b4ec5f47a7a9f9ad272054572d7be27a/</link><description>Updates for the code to work in Python3 but keep compatibility with python 2.7</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:53:26 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/6d564648b4ec5f47a7a9f9ad272054572d7be27a/</guid></item><item><title>Cristovao B da Cruz e Silva committed [adb99e]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/adb99eb0ee3298891e5863c3a8ce879b60a897a4/</link><description>Updated main library to Python 3 and kept it compatible with python 2.7</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:53:26 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/adb99eb0ee3298891e5863c3a8ce879b60a897a4/</guid></item><item><title>Cristovao B da Cruz e Silva committed [65f78a]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/65f78a96d73609a6adb0fbd8d3363922d3c07bc5/</link><description>Added a sublime text project file</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:53:26 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/65f78a96d73609a6adb0fbd8d3363922d3c07bc5/</guid></item><item><title>Cristovao B da Cruz e Silva committed [b9a7d7]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/b9a7d7bc771b242dea4fa3478c42da86249c40fe/</link><description>Added tracking of indexing DB for further consistency</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristovao B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:53:26 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/b9a7d7bc771b242dea4fa3478c42da86249c40fe/</guid></item><item><title>Cristóvão da Cruz e Silva committed [388eb8]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/388eb8e2b55517e65ac727cace5ebc3b9dfe401d/</link><description>Several updates to run on python 2.7, also got it working using UPSP as source from excel file</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/388eb8e2b55517e65ac727cace5ebc3b9dfe401d/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [41ddd1]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/41ddd130d4c135d644072088d6f4c7c66aa89de6/</link><description>Some updates and bug fixes</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/41ddd130d4c135d644072088d6f4c7c66aa89de6/</guid></item><item><title>Cristóvão da Cruz e Silva committed [3696d5]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/3696d5b60d6ddf8d7b4f2d66ed76843a7be06817/</link><description>Added a test script</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/3696d5b60d6ddf8d7b4f2d66ed76843a7be06817/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [53bb52]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/53bb522d36761bf3cf828ffe02dab7ba09cee483/</link><description>Added output of master reference status to the XLS ooutput. Some fixes to the logic of the operations to perform on libraries. Updated information on consolidation functions.</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/53bb522d36761bf3cf828ffe02dab7ba09cee483/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [14c493]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/14c4939063934bbcb147c67c2752b0fb9ca87313/</link><description>Added ability to keep information on the master reference (important for the IPI database)</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/14c4939063934bbcb147c67c2752b0fb9ca87313/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [53bb52]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/53bb522d36761bf3cf828ffe02dab7ba09cee483/</link><description>Added output of master reference status to the XLS ooutput. Some fixes to the logic of the operations to perform on libraries. Updated information on consolidation functions.</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/53bb522d36761bf3cf828ffe02dab7ba09cee483/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [1a7167]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/1a7167199db9eaff633e73ffdf01e874c6af380c/</link><description>Finished reviewing consolidateFromDB</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/1a7167199db9eaff633e73ffdf01e874c6af380c/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [083270]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/083270dac8d08662c3840735f0535fdab9229f58/</link><description>Renamed variables in consolidation functions</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/083270dac8d08662c3840735f0535fdab9229f58/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [1217dc]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/1217dc8511aeaa658530e881d53a2f012c52d3f6/</link><description>Finished reviewing consolidation functions</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/1217dc8511aeaa658530e881d53a2f012c52d3f6/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [4282b8]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/4282b81f713b4b68224b64770ab0db21eb2cbad2/</link><description>Started adding new test scripts. Minor fix to used UniProt databases</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/4282b81f713b4b68224b64770ab0db21eb2cbad2/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [e7e7e1]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/e7e7e1235fd3b37cf50442ef3d4344b424120ae9/</link><description>Renamed convertIPI2UP</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/e7e7e1235fd3b37cf50442ef3d4344b424120ae9/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [8a48ed]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/8a48ed9403a0999dff474be264e811983139630f/</link><description>Fixed GOManager, renamed script</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/8a48ed9403a0999dff474be264e811983139630f/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [99809f]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/99809fc990ea45cc7400b23956a32c4c7b98ca10/</link><description>Removed convert2UP and started implementing blast search</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/99809fc990ea45cc7400b23956a32c4c7b98ca10/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [c92fee]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/c92fee8510bbdbd08fcd44342c333b22172e4b7b/</link><description>Added representation and string for DBSequence</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/c92fee8510bbdbd08fcd44342c333b22172e4b7b/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [ec5743]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/ec57435d1faea4543dccac73d940b5f301b56ebf/</link><description>Updated metadata</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/ec57435d1faea4543dccac73d940b5f301b56ebf/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [916efc]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/916efccc0e744a85ba0e1f834b54d039108b618d/</link><description>Fixing accessions</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/916efccc0e744a85ba0e1f834b54d039108b618d/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [2e7635]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/2e7635cf87be3f51692fbffee99f0a23891a0730/</link><description>Renamed protein class property to the more relatable name "assays"</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/2e7635cf87be3f51692fbffee99f0a23891a0730/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [53014a]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/53014a9c7ee5bb2c866f453dda87c7667005d2f7/</link><description>Finished fixing accessions. Added possibility to go to a database using a BLAST search (some filtering still needs to be done to remove spurious matches)</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/53014a9c7ee5bb2c866f453dda87c7667005d2f7/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [9d5159]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/9d5159963ab7686de7264f7f28a560aa90fe8b12/</link><description>Some small fixes, reworked accession verification, added a base option using regular expressions, only the regular expression has to be provided in derived classes</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/9d5159963ab7686de7264f7f28a560aa90fe8b12/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [bbae90]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/bbae90e4c977d616aa3f4449ae16587743c58204/</link><description>Removed implicit creation of database managers. Fixed a bug when doing a blast when the endDB does not exist yet</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/bbae90e4c977d616aa3f4449ae16587743c58204/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [557254]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/55725437da73821d414fb5e80ce0edfc8870bda9/</link><description>Finished removing implicit calling of database managers</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/55725437da73821d414fb5e80ce0edfc8870bda9/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [ece924]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/ece92464de01495d77b62a325748ef7001b052f3/</link><description>Fixed examples and placed all Library code inside the Library directory</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/ece92464de01495d77b62a325748ef7001b052f3/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [156e50]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/156e508ac5c122cc628038e14ba5e1d794ac8c54/</link><description>Some modifications to example and initialization. Implemented some methods to handle outlier assays</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/156e508ac5c122cc628038e14ba5e1d794ac8c54/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [56f10b]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/56f10be87ab92d69a4f6550543133359cf5fd59f/</link><description>Added optional extras to xls output</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/56f10be87ab92d69a4f6550543133359cf5fd59f/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [06cd76]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/06cd7637f9e397f96318256cc407140faf11f7b7/</link><description>Renamed some methods, added hypothesis testing to filter the library</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/06cd7637f9e397f96318256cc407140faf11f7b7/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [39a617]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/39a6173f687c43551032643f92df2038a5c19250/</link><description>Added subset info to GO DB</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/39a6173f687c43551032643f92df2038a5c19250/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [f6af29]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/f6af29fad9b8cf8702f6f8154054234e3e769802/</link><description>Improved performance of GO manager</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/f6af29fad9b8cf8702f6f8154054234e3e769802/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [483b70]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/483b702caaab54afb9879bfa14b354ec8a858928/</link><description>Fixed bug from code reorganization</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/483b702caaab54afb9879bfa14b354ec8a858928/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [c46c10]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/c46c1021bfbee1f1e338945b45499f67ed1ad7b9/</link><description>Fixed references to files inside the library directories</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/c46c1021bfbee1f1e338945b45499f67ed1ad7b9/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [1bd067]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/1bd06766840c5b8aafd030019e90da6b8da76164/</link><description>Fixed accessing in the GO manager</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/1bd06766840c5b8aafd030019e90da6b8da76164/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [c57f88]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/c57f88fa03a7d17968d7d7ba35ca1215c971308f/</link><description>Finalized GO graphing routine</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/c57f88fa03a7d17968d7d7ba35ca1215c971308f/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [d92b0b]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/d92b0b328ceb618063de4f60497d07ef03705636/</link><description>Optimized methods to access members</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/d92b0b328ceb618063de4f60497d07ef03705636/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [4fa99e]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/4fa99e6f0d18cb90670ce88c0b1f86b30d53551b/</link><description>Added several tests</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/4fa99e6f0d18cb90670ce88c0b1f86b30d53551b/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [f29236]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/f29236d7547a36d16745b413c47ca1e763f1cef4/</link><description>Reorganized GO loader. Added new method to load a GO Slim</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/f29236d7547a36d16745b413c47ca1e763f1cef4/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [fc7ef5]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/fc7ef5c520fadfdede85f4bf277a9cc8d5129a5a/</link><description>Started implementing the GO graphing options</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/fc7ef5c520fadfdede85f4bf277a9cc8d5129a5a/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [6fcb84]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/6fcb84d465a6dd6c54b47f0bf8d03139a022705a/</link><description>Updated blast method name</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/6fcb84d465a6dd6c54b47f0bf8d03139a022705a/</guid></item><item><title>Odete@odetes-air.lan committed [ce0906]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/ce0906d03d6daa548c8d2d37659b8c7ca7f02721/</link><description>Added option to save main ID of a given database for each protein</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Odete@odetes-air.lan</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:12 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/ce0906d03d6daa548c8d2d37659b8c7ca7f02721/</guid></item><item><title>Odete@odetes-air.lan committed [cf18f6]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/cf18f693c1750f0437152d0dbc600b97d161f9fd/</link><description>Fixed bugs in GO filtering functions</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Odete@odetes-air.lan</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/cf18f693c1750f0437152d0dbc600b97d161f9fd/</guid></item><item><title>Odete@odetes-air.lan committed [5a3a88]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/5a3a883844b1a1c9feb61be21640ec05f69bbdea/</link><description>Added list of proteins output to txt option</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Odete@odetes-air.lan</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/5a3a883844b1a1c9feb61be21640ec05f69bbdea/</guid></item><item><title>Odete@odetes-air.lan committed [3c2434]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/3c243400328a70f5548fa7932da175900d1abcf1/</link><description>Added option for xls output</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Odete@odetes-air.lan</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/3c243400328a70f5548fa7932da175900d1abcf1/</guid></item><item><title>Odete@odetes-air.lan committed [56baa5]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/56baa50772d07d78c67424f359adc6798ca372bd/</link><description>Added optional parameter to set the percentage of similarity.</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Odete@odetes-air.lan</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/56baa50772d07d78c67424f359adc6798ca372bd/</guid></item><item><title>Cristóvão B da Cruz e Silva committed [5f2802]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/5f2802923182b0f90414a5f4a00570657b331a83/</link><description>Fixed comment indentation</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/5f2802923182b0f90414a5f4a00570657b331a83/</guid></item><item><title>Cristóvão B da Cruz e Silva committed [24787f]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/24787fb5f45ad85766a881bd918f492cb44963e1/</link><description>Added license file</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/24787fb5f45ad85766a881bd918f492cb44963e1/</guid></item><item><title>Cristóvão B da Cruz e Silva committed [e31f50]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/e31f50aff06e9f282db1938b81760d4d110be37d/</link><description>Small fix</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/e31f50aff06e9f282db1938b81760d4d110be37d/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [3b2eb2]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/3b2eb2743712dd62527e6c827636ad2cb7acd2d3/</link><description>Update README name</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/3b2eb2743712dd62527e6c827636ad2cb7acd2d3/</guid></item><item><title>Cristóvão B da Cruz e Silva committed [66782a]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/66782a7637fc2576d4f9619f01cf8173264ad102/</link><description>Updated the tests to reflect name change</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/66782a7637fc2576d4f9619f01cf8173264ad102/</guid></item><item><title>Cristóvão B da Cruz e Silva committed [759832]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/7598321d182f3a3d907f4fc4b50c416cce38ae99/</link><description>Added a revamped README</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/7598321d182f3a3d907f4fc4b50c416cce38ae99/</guid></item><item><title>Cristóvão B da Cruz e Silva committed [758cee]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/758cee33d23c811525b5017d31e44a8756807e5a/</link><description>Updated library to reflect name change</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/758cee33d23c811525b5017d31e44a8756807e5a/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [101fde]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/101fde32712aedcb029c9be2b15bf2e5261293ee/</link><description>Updated examples to reflect name change</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/101fde32712aedcb029c9be2b15bf2e5261293ee/</guid></item><item><title>Cristóvão B. da Cruz e Silva committed [403800]</title><link>https://sourceforge.net/p/sysbiotk/code/ci/403800fea87a4c3742d84265721daeb6471c46ac/</link><description>Renamed ProtDB to the new name SysBioTK</description><dc:creator xmlns:dc="http://purl.org/dc/elements/1.1/">Cristóvão B. da Cruz e Silva</dc:creator><pubDate>Thu, 27 Jan 2022 11:03:11 -0000</pubDate><guid>https://sourceforge.net/p/sysbiotk/code/ci/403800fea87a4c3742d84265721daeb6471c46ac/</guid></item></channel></rss>