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<feed xml:lang="en" xmlns="http://www.w3.org/2005/Atom"><title>Recent changes to tickets</title><link href="https://sourceforge.net/p/vplg/tickets/" rel="alternate"/><link href="https://sourceforge.net/p/vplg/tickets/feed.atom" rel="self"/><id>https://sourceforge.net/p/vplg/tickets/</id><updated>2015-06-16T08:35:01.434000Z</updated><subtitle>Recent changes to tickets</subtitle><entry><title>#23 Graphlet counting seems broken</title><link href="https://sourceforge.net/p/vplg/tickets/23/?limit=25#0ccf" rel="alternate"/><published>2015-06-16T08:35:01.434000Z</published><updated>2015-06-16T08:35:01.434000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.net303c4a6b2b12fbed2068c09d057188b54a793fbd</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;ul&gt;
&lt;li&gt;&lt;strong&gt;assigned_to&lt;/strong&gt;: Ben Haladik&lt;/li&gt;
&lt;/ul&gt;&lt;/div&gt;</summary></entry><entry><title>#24 Generalize the input format</title><link href="https://sourceforge.net/p/vplg/tickets/24/?limit=25#6554" rel="alternate"/><published>2015-06-16T08:34:41.139000Z</published><updated>2015-06-16T08:34:41.139000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.net965f6fc8403409d77dc8c655f8e8fdb200357e4c</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;ul&gt;
&lt;li&gt;&lt;strong&gt;assigned_to&lt;/strong&gt;: Ben Haladik&lt;/li&gt;
&lt;/ul&gt;&lt;/div&gt;</summary></entry><entry><title>Add NAR publication to citations page</title><link href="https://sourceforge.net/p/vplg/tickets/30/" rel="alternate"/><published>2015-03-16T12:19:36.013000Z</published><updated>2015-03-16T12:19:36.013000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.net5693dfc1b8a8d2836e6c5acc7df9c0b384b99a55</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;p&gt;Add NAR publication to citations page&lt;/p&gt;&lt;/div&gt;</summary></entry><entry><title>Chain terminus labels N and C should be moved slightly in KEY</title><link href="https://sourceforge.net/p/vplg/tickets/29/" rel="alternate"/><published>2015-03-16T12:18:00.853000Z</published><updated>2015-03-16T12:18:00.853000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.netbfa24d935d89eb8754fc7cffde50ef360b879937</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;p&gt;Chain terminus labels N and C should be moved slightly in KEY. When chain ends upwards, C should be drawn above the SSE instead of below it.&lt;/p&gt;&lt;/div&gt;</summary></entry><entry><title>Chain names which are numbers are not supported by FG page</title><link href="https://sourceforge.net/p/vplg/tickets/28/" rel="alternate"/><published>2015-03-16T12:16:08.413000Z</published><updated>2015-03-16T12:16:08.413000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.net07f3fbc0764d698e822ac720ffb5ce0a3375681a</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;p&gt;If you enter a chain name which is a number, the FGs and linnot images for it are NOT loaded.&lt;/p&gt;&lt;/div&gt;</summary></entry><entry><title>Default PG image should be the albe graph</title><link href="https://sourceforge.net/p/vplg/tickets/27/" rel="alternate"/><published>2015-03-16T12:15:05.107000Z</published><updated>2015-03-16T12:15:05.107000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.netda7d46b231e6e0393ba738123bc340319e9c3873</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;p&gt;Default PG image should be the albe graph, instead of alpha&lt;/p&gt;&lt;/div&gt;</summary></entry><entry><title>#19 Separate spatial relations of SSEs from contact types</title><link href="https://sourceforge.net/p/vplg/tickets/19/?limit=25#87e8" rel="alternate"/><published>2015-03-16T11:55:18.865000Z</published><updated>2015-03-16T11:55:18.865000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.net99bf3ef691615522f3e40223a40cd715ae9a62ca</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;p&gt;This is not required atm, but the current way of implementing it still remains questionable.&lt;/p&gt;&lt;/div&gt;</summary></entry><entry><title>Implement alpha-beta motif search patterns</title><link href="https://sourceforge.net/p/vplg/tickets/26/" rel="alternate"/><published>2015-03-16T11:54:00.273000Z</published><updated>2015-03-16T11:54:00.273000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.neta5d51f6c79f91fcdf3f983293b3809c9eeed5df5</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;p&gt;Implement alpha-beta motif search patterns. This requires implementing the DBManager.chainContainsMotif_XX() functions in PLCC.&lt;/p&gt;&lt;/div&gt;</summary></entry><entry><title>Implement chain-level drawing of complex graphs</title><link href="https://sourceforge.net/p/vplg/tickets/25/" rel="alternate"/><published>2015-03-16T11:52:34.870000Z</published><updated>2015-03-16T11:52:34.870000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.net66d0e39285363542ddcebe66ea80d2a0d6e72d6d</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;p&gt;Implement chain-level drawing of complex graphs. Write the images to disk, store their paths in the DB.&lt;/p&gt;&lt;/div&gt;</summary></entry><entry><title>#4 Implement arrow-style SSE representation</title><link href="https://sourceforge.net/p/vplg/tickets/4/?limit=25#055a" rel="alternate"/><published>2015-03-16T11:51:01.487000Z</published><updated>2015-03-16T11:51:01.487000Z</updated><author><name>Tim Schäfer</name><uri>https://sourceforge.net/u/dfspspirit/</uri></author><id>https://sourceforge.net324268f6548e8823caec95205c3b6398db7e184b</id><summary type="html">&lt;div class="markdown_content"&gt;&lt;ul&gt;
&lt;li&gt;&lt;strong&gt;status&lt;/strong&gt;: open --&amp;gt; closed&lt;/li&gt;
&lt;li&gt;&lt;strong&gt;assigned_to&lt;/strong&gt;: Tim Schäfer&lt;/li&gt;
&lt;li&gt;&lt;strong&gt;Milestone&lt;/strong&gt;: VPLG -- Critical --&amp;gt; VPLG -- Important&lt;/li&gt;
&lt;/ul&gt;&lt;/div&gt;</summary></entry></feed>