BrainWave 63Brain AG
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Genome Analysis Toolkit (GATK)Broad Institute
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About
BrainWave 6 is an efficient, scalable electrophysiology software designed for recording, playback, and analysis of data from single- and multi-well high-density microelectrode arrays (HD-MEAs), providing unified tools to go from acquisition to insight with streamlined automation and enhanced analytics. It supports real-time visualization of HD-MEA data across up to 24 wells with full control of experimental setup and timing, and lets users navigate recordings, review raw or processed data, and annotate events directly within the software. BrainWave 6 offers hundreds of metrics for neuronal and cardiac activity, area-based intra-well segmentation for multi-spheroid and organoid analysis, and AI-enhanced spike detection. It is scalable for high-throughput workflows, compatible with all 3Brain systems, and supports robotic automation when paired with HyperCAM Delta. Additional modules enable automated long-term potentiation protocols with real-time readouts.
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About
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK is the industry standard for identifying SNPs and indels in germline DNA and RNAseq data. Its scope is now expanding to include somatic short variant calling and to tackle copy number (CNV) and structural variation (SV). In addition to the variant callers themselves, the GATK also includes many utilities to perform related tasks such as processing and quality control of high-throughput sequencing data and bundles the popular Picard toolkit. These tools were primarily designed to process exomes and whole genomes generated with Illumina sequencing technology, but they can be adapted to handle a variety of other technologies and experimental designs.
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Platforms Supported
Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook
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Platforms Supported
Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook
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Audience
Researchers in neuroscience and electrophysiology who need an all-in-one platform for recording, analyzing, and managing high-density microelectrode array data from neuronal and cardiac cultures, organoids, slices, and multiwell experiments
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Audience
Researchers wanting a solution to analyze, manage, and handle genome data
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Support
Phone Support
24/7 Live Support
Online
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Support
Phone Support
24/7 Live Support
Online
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API
Offers API
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API
Offers API
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Pricing
No information available.
Free Version
Free Trial
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Pricing
Free
Free Version
Free Trial
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Reviews/
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Reviews/
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Training
Documentation
Webinars
Live Online
In Person
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Training
Documentation
Webinars
Live Online
In Person
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Company Information3Brain AG
Founded: 2004
Switzerland
www.3brain.com/products/software/brainwave-6
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Company InformationBroad Institute
United States
gatk.broadinstitute.org/hc/
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