Open Source Linux Data Science Tools
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Data Science Tools for Linux
View 17 business solutionsBrowse free open source Data Science tools and projects for Linux below. Use the toggles on the left to filter open source Data Science tools by OS, license, language, programming language, and project status.
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ggplot2
An implementation of the Grammar of Graphics in R
ggplot2 is a system written in R for declaratively creating graphics. It is based on The Grammar of Graphics, which focuses on following a layered approach to describe and construct visualizations or graphics in a structured manner. With ggplot2 you simply provide the data, tell ggplot2 how to map variables to aesthetics, what graphical primitives to use, and it will take care of the rest. ggplot2 is over 10 years old and is used by hundreds of thousands of people all over the world for plotting. In most cases using ggplot2 starts with supplying a dataset and aesthetic mapping (with aes()); adding on layers (like geom_point() or geom_histogram()), scales (like scale_colour_brewer()), and faceting specifications (like facet_wrap()); and finally, coordinating systems. ggplot2 has a rich ecosystem of community-maintained extensions for those looking for more innovation. ggplot2 is a part of the tidyverse, an ecosystem of R packages designed for data science. -
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RStudio
RStudio is an integrated development environment (IDE) for R
RStudio is a powerful, full-featured integrated development environment (IDE) tailored primarily for the R programming language but increasingly supportive of other languages like Python and Julia. It brings together console, editor, plotting, workspace, history, and file-management panes into a unified interface, helping data scientists, statisticians, and analysts to work more productively. The IDE is cross-platform: there are desktop versions for Windows, macOS and Linux, as well as a server version for remote or multi-user deployment via a web browser. In addition to code editing and execution, RStudio offers extensive support for reproducible research via R Markdown, notebooks, and integration with version control systems like Git and SVN. Package development is built in, with tooling for building, checking, and testing R packages, plus integration with documentation tools, CRAN submission workflows, and project templates. -
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XGBoost
Scalable and Flexible Gradient Boosting
XGBoost is an optimized distributed gradient boosting library, designed to be scalable, flexible, portable and highly efficient. It supports regression, classification, ranking and user defined objectives, and runs on all major operating systems and cloud platforms. XGBoost works by implementing machine learning algorithms under the Gradient Boosting framework. It also offers parallel tree boosting (GBDT, GBRT or GBM) that can quickly and accurately solve many data science problems. XGBoost can be used for Python, Java, Scala, R, C++ and more. It can run on a single machine, Hadoop, Spark, Dask, Flink and most other distributed environments, and is capable of solving problems beyond billions of examples. -
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Positron
Positron, a next-generation data science IDE
Positron is a next-generation integrated development environment (IDE) created by Posit PBC (formerly RStudio Inc) specifically tailored for data science workflows in Python, R, and multi-language ecosystems. It aims to unify exploratory data analysis, production code, and data-app authoring in a single environment so that data scientists move from “question → insight → application” without switching tools. Built on the open-source Code-OSS foundation, Positron provides a familiar coding experience along with specialized panes and tooling for variable inspection, data-frame viewing, plotting previews, and interactive consoles designed for analytical work. The IDE supports notebook and script workflows, integration of data-app frameworks (such as Shiny, Streamlit, Dash), database and cloud connections, and built-in AI-assisted capabilities to help write code, explore data, and build models. -
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Quadratic
Data science spreadsheet with Python & SQL
Quadratic enables your team to work together on data analysis to deliver better results, faster. You already know how to use a spreadsheet, but you’ve never had this much power before. Quadratic is a Web-based spreadsheet application that runs in the browser and as a native app (via Electron). Our goal is to build a spreadsheet that enables you to pull your data from its source (SaaS, Database, CSV, API, etc) and then work with that data using the most popular data science tools today (Python, Pandas, SQL, JS, Excel Formulas, etc). Quadratic has no environment to configure. The grid runs entirely in the browser with no backend service. This makes our grids completely portable and very easy to share. Quadratic has Python library support built-in. Bring the latest open-source tools directly to your spreadsheet. Quickly write code and see the output in full detail. No more squinting into a tiny terminal to see your data output. -
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Milvus
Vector database for scalable similarity search and AI applications
Milvus is an open-source vector database built to power embedding similarity search and AI applications. Milvus makes unstructured data search more accessible, and provides a consistent user experience regardless of the deployment environment. Milvus 2.0 is a cloud-native vector database with storage and computation separated by design. All components in this refactored version of Milvus are stateless to enhance elasticity and flexibility. Average latency measured in milliseconds on trillion vector datasets. Rich APIs designed for data science workflows. Consistent user experience across laptop, local cluster, and cloud. Embed real-time search and analytics into virtually any application. Milvus’ built-in replication and failover/failback features ensure data and applications can maintain business continuity in the event of a disruption. Component-level scalability makes it possible to scale up and down on demand. -
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tsfresh
Automatic extraction of relevant features from time series
tsfresh is a python package. It automatically calculates a large number of time series characteristics, the so called features. tsfresh is used to to extract characteristics from time series. Without tsfresh, you would have to calculate all characteristics by hand. With tsfresh this process is automated and all your features can be calculated automatically. Further tsfresh is compatible with pythons pandas and scikit-learn APIs, two important packages for Data Science endeavours in python. The extracted features can be used to describe or cluster time series based on the extracted characteristics. Further, they can be used to build models that perform classification/regression tasks on the time series. Often the features give new insights into time series and their dynamics. -
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Metaflow
A framework for real-life data science
Metaflow is a human-friendly Python library that helps scientists and engineers build and manage real-life data science projects. Metaflow was originally developed at Netflix to boost productivity of data scientists who work on a wide variety of projects from classical statistics to state-of-the-art deep learning. -
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PySyft
Data science on data without acquiring a copy
Most software libraries let you compute over the information you own and see inside of machines you control. However, this means that you cannot compute on information without first obtaining (at least partial) ownership of that information. It also means that you cannot compute using machines without first obtaining control over those machines. This is very limiting to human collaboration and systematically drives the centralization of data, because you cannot work with a bunch of data without first putting it all in one (central) place. The Syft ecosystem seeks to change this system, allowing you to write software which can compute over information you do not own on machines you do not have (total) control over. This not only includes servers in the cloud, but also personal desktops, laptops, mobile phones, websites, and edge devices. Wherever your data wants to live in your ownership, the Syft ecosystem exists to help keep it there while allowing it to be used privately. -
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SageMaker Training Toolkit
Train machine learning models within Docker containers
Train machine learning models within a Docker container using Amazon SageMaker. Amazon SageMaker is a fully managed service for data science and machine learning (ML) workflows. You can use Amazon SageMaker to simplify the process of building, training, and deploying ML models. To train a model, you can include your training script and dependencies in a Docker container that runs your training code. A container provides an effectively isolated environment, ensuring a consistent runtime and reliable training process. The SageMaker Training Toolkit can be easily added to any Docker container, making it compatible with SageMaker for training models. If you use a prebuilt SageMaker Docker image for training, this library may already be included. Write a training script (eg. train.py). Define a container with a Dockerfile that includes the training script and any dependencies. -
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gophernotes
The Go kernel for Jupyter notebooks and nteract
gophernotes is a Go kernel for Jupyter notebooks and nteract. It lets you use Go interactively in a browser-based notebook or desktop app. Use gophernotes to create and share documents that contain live Go code, equations, visualizations and explanatory text. These notebooks, with the live Go code, can then be shared with others via email, Dropbox, GitHub and the Jupyter Notebook Viewer. Go forth and do data science, or anything else interesting, with Go notebooks! This project utilizes a Go interpreter called gomacro under the hood to evaluate Go code interactively. The gophernotes logo was designed by the brilliant Marcus Olsson and was inspired by Renee French's original Go Gopher design. If you have the JUPYTER_PATH environmental variable set or if you are using an older version of Jupyter, you may need to copy this kernel config to another directory. -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! And we're not talking about bikeshedding the indentation aesthetics or pedantic formatting standards, ultimately, data science code quality is about correctness and reproducibility. It's no secret that good analyses are often the result of very scattershot and serendipitous explorations. Tentative experiments and rapidly testing approaches that might not work out are all part of the process for getting to the good stuff, and there is no magic bullet to turn data exploration into a simple, linear progression. -
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Dask
Parallel computing with task scheduling
Dask is a Python library for parallel and distributed computing, designed to scale analytics workloads from single machines to large clusters. It integrates with familiar tools like NumPy, Pandas, and scikit-learn while enabling execution across cores or nodes with minimal code changes. Dask excels at handling large datasets that don’t fit into memory and is widely used in data science, machine learning, and big data pipelines. -
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DearPyGui
Graphical User Interface Toolkit for Python with minimal dependencies
Dear PyGui is an easy-to-use, dynamic, GPU-Accelerated, cross-platform graphical user interface toolkit(GUI) for Python. It is “built with” Dear ImGui. Features include traditional GUI elements such as buttons, radio buttons, menus, and various methods to create a functional layout. Additionally, DPG has an incredible assortment of dynamic plots, tables, drawings, debuggers, and multiple resource viewers. DPG is well suited for creating simple user interfaces as well as developing complex and demanding graphical interfaces. DPG offers a solid framework for developing scientific, engineering, gaming, data science and other applications that require fast and interactive interfaces. The Tutorials will provide a great overview and links to each topic in the API Reference for more detailed reading. Complete theme and style control. GPU-based rendering and efficient C/C++ code. -
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Great Expectations
Always know what to expect from your data
Great Expectations helps data teams eliminate pipeline debt, through data testing, documentation, and profiling. Software developers have long known that testing and documentation are essential for managing complex codebases. Great Expectations brings the same confidence, integrity, and acceleration to data science and data engineering teams. Expectations are assertions for data. They are the workhorse abstraction in Great Expectations, covering all kinds of common data issues. Expectations are a great start, but it takes more to get to production-ready data validation. Where are Expectations stored? How do they get updated? How do you securely connect to production data systems? How do you notify team members and triage when data validation fails? Great Expectations supports all of these use cases out of the box. Instead of building these components for yourself over weeks or months, you will be able to add production-ready validation to your pipeline in a day. -
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Nuclio
High-Performance Serverless event and data processing platform
Nuclio is an open source and managed serverless platform used to minimize development and maintenance overhead and automate the deployment of data-science-based applications. Real-time performance running up to 400,000 function invocations per second. Portable across low laptops, edge, on-prem and multi-cloud deployments. The first serverless platform supporting GPUs for optimized utilization and sharing. Automated deployment to production in a few clicks from Jupyter notebook. Deploy one of the example serverless functions or write your own. The dashboard, when running outside an orchestration platform (e.g. Kubernetes or Swarm), will simply be deployed to the local docker daemon. The Getting Started With Nuclio On Kubernetes guide has a complete step-by-step guide to using Nuclio serverless functions over Kubernetes. -
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NannyML
Detecting silent model failure. NannyML estimates performance
NannyML is an open-source python library that allows you to estimate post-deployment model performance (without access to targets), detect data drift, and intelligently link data drift alerts back to changes in model performance. Built for data scientists, NannyML has an easy-to-use interface, and interactive visualizations, is completely model-agnostic, and currently supports all tabular classification use cases. NannyML closes the loop with performance monitoring and post deployment data science, empowering data scientist to quickly understand and automatically detect silent model failure. By using NannyML, data scientists can finally maintain complete visibility and trust in their deployed machine learning models. When the actual outcome of your deployed prediction models is delayed, or even when post-deployment target labels are completely absent, you can use NannyML's CBPE-algorithm to estimate model performance. -
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marimo
A reactive notebook for Python
marimo is an open-source reactive notebook for Python, reproducible, git-friendly, executable as a script, and shareable as an app. marimo notebooks are reproducible, extremely interactive, designed for collaboration (git-friendly!), deployable as scripts or apps, and fit for modern Pythonista. Run one cell and marimo reacts by automatically running affected cells, eliminating the error-prone chore of managing the notebook state. marimo's reactive UI elements, like data frame GUIs and plots, make working with data feel refreshingly fast, futuristic, and intuitive. Version with git, run as Python scripts, import symbols from a notebook into other notebooks or Python files, and lint or format with your favorite tools. You'll always be able to reproduce your collaborators' results. Notebooks are executed in a deterministic order, with no hidden state, delete a cell and marimo deletes its variables while updating affected cells. -
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Orchest
Build data pipelines, the easy way
Code, run and monitor your data pipelines all from your browser! From idea to scheduled pipeline in hours, not days. Interactively build your data science pipelines in our visual pipeline editor. Versioned as a JSON file. Run scripts or Jupyter notebooks as steps in a pipeline. Python, R, Julia, JavaScript, and Bash are supported. Parameterize your pipelines and run them periodically on a cron schedule. Easily install language or system packages. Built on top of regular Docker container images. Creation of multiple instances with up to 8 vCPU & 32 GiB memory. A free Orchest instance with 2 vCPU & 8 GiB memory. Simple data pipelines with Orchest. Each step runs a file in a container. It's that simple! Spin up services whose lifetime spans across the entire pipeline run. Easily define your dependencies to run on any machine. Run any subset of the pipeline directly or periodically. -
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cuDF
GPU DataFrame Library
Built based on the Apache Arrow columnar memory format, cuDF is a GPU DataFrame library for loading, joining, aggregating, filtering, and otherwise manipulating data. cuDF provides a pandas-like API that will be familiar to data engineers & data scientists, so they can use it to easily accelerate their workflows without going into the details of CUDA programming. For additional examples, browse our complete API documentation, or check out our more detailed notebooks. cuDF can be installed with conda (miniconda, or the full Anaconda distribution) from the rapidsai channel. cuDF is supported only on Linux, and with Python versions 3.7 and later. The RAPIDS suite of open-source software libraries aims to enable the execution of end-to-end data science and analytics pipelines entirely on GPUs. It relies on NVIDIA® CUDA® primitives for low-level compute optimization but exposing that GPU parallelism and high-bandwidth memory speed through user-friendly Python interfaces. -
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DAT Linux
The data science OS
DAT Linux is a Linux distribution for data science. It brings together all your favourite open-source data science tools and apps into a ready-to-run desktop environment. https://datlinux.com It's based on Lubuntu, so it’s easy to install and use. The custom DAT Linux Control Panel provides a centralised one-stop-shop for running and managing dozens of data science programs. DAT Linux is perfect for students, professionals, academics, or anyone interested in data science who doesn’t want to spend endless hours downloading, installing, configuring, and maintaining applications from a range of sources, each with different technical requirements and set-up challenges. -
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AWS Step Functions Data Science SDK
For building machine learning (ML) workflows and pipelines on AWS
The AWS Step Functions Data Science SDK is an open-source library that allows data scientists to easily create workflows that process and publish machine learning models using Amazon SageMaker and AWS Step Functions. You can create machine learning workflows in Python that orchestrate AWS infrastructure at scale, without having to provision and integrate the AWS services separately. The best way to quickly review how the AWS Step Functions Data Science SDK works is to review the related example notebooks. These notebooks provide code and descriptions for creating and running workflows in AWS Step Functions Using the AWS Step Functions Data Science SDK. In Amazon SageMaker, example Jupyter notebooks are available in the example notebooks portion of a notebook instance. To run the AWS Step Functions Data Science SDK example notebooks locally, download the sample notebooks and open them in a working Jupyter instance. -
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CSAPP-Labs
Solutions and Notes for Labs of Computer Systems
CSAPP-Labs is a repository that organizes and provides practical lab exercises corresponding to the famous textbook Computer Systems: A Programmer’s Perspective (CS:APP), helping students deepen their understanding of how computer systems work at the machine level. The exercises cover core topics such as data representation, assembly language, processor architecture, cache behavior, memory hierarchy, linking, and concurrency, contextualizing abstract concepts from the book in real code and experiments. Each lab is structured to include test programs, Makefiles, harnesses, and step-by-step instructions that guide students through hands-on interaction with low-level programming and system behavior. By actually building and debugging code that runs close to hardware, learners acquire intuition about performance trade-offs, bit-level manipulation, stack frame layout, and how compilers and OS features influence execution. -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
The Data Science Specialization Courses repository is a collection of materials that support the Johns Hopkins University Data Science Specialization on Coursera. It contains the source code and resources used throughout the specialization’s courses, covering a broad range of data science concepts and techniques. The repository is designed as a shared space for code examples, datasets, and instructional materials, helping learners follow along with lectures and assignments. It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow. -
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NVIDIA Merlin
Library providing end-to-end GPU-accelerated recommender systems
NVIDIA Merlin is an open-source library that accelerates recommender systems on NVIDIA GPUs. The library enables data scientists, machine learning engineers, and researchers to build high-performing recommenders at scale. Merlin includes tools to address common feature engineering, training, and inference challenges. Each stage of the Merlin pipeline is optimized to support hundreds of terabytes of data, which is all accessible through easy-to-use APIs. For more information, see NVIDIA Merlin on the NVIDIA developer website. Transform data (ETL) for preprocessing and engineering features. Accelerate your existing training pipelines in TensorFlow, PyTorch, or FastAI by leveraging optimized, custom-built data loaders. Scale large deep learning recommender models by distributing large embedding tables that exceed available GPU and CPU memory. Deploy data transformations and trained models to production with only a few lines of code.
