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About

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK is the industry standard for identifying SNPs and indels in germline DNA and RNAseq data. Its scope is now expanding to include somatic short variant calling and to tackle copy number (CNV) and structural variation (SV). In addition to the variant callers themselves, the GATK also includes many utilities to perform related tasks such as processing and quality control of high-throughput sequencing data and bundles the popular Picard toolkit. These tools were primarily designed to process exomes and whole genomes generated with Illumina sequencing technology, but they can be adapted to handle a variety of other technologies and experimental designs.

About

Generate greater return on research and improve team productivity. Extend private and public data across teams with interactive data visualization. Rosalind is the only multi-tenant SaaS platform designed for scientists. Analyze, interpret, share, plan, validate, and generate new hypotheses. Code-free visualization, AI-powered interpretation, best-in-class collaboration. Scientists of every skill level can benefit from ROSALIND since no programming or bioinformatics skills are required. With powerful downstream analysis and collaboration, ROSALIND is a discovery platform and data hub connecting experiment design, quality control, and pathway exploration. ROSALIND automatically manages tens of thousands of compute cores and petabytes of storage to dynamically scale up and down for every experiment to deliver results. Instantly share results with other scientists across the globe with audit tracking so everyone can focus on the interpretation, not the processing.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Researchers wanting a solution to analyze, manage, and handle genome data

Audience

Academic researchers wanting a solution to analyze, interpret, share, and validate data

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

Pricing

Free
Free Version
Free Trial

Pricing

$3,250 per month
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

Broad Institute
United States
gatk.broadinstitute.org/hc/

Company Information

ROSALIND
Founded: 2013
United States
www.rosalind.bio/

Alternatives

Alternatives

VSClinical

VSClinical

Golden Helix
Partek Flow

Partek Flow

Partek
VarSeq

VarSeq

Golden Helix
Emedgene

Emedgene

Illumina
OmicsBox

OmicsBox

BioBam Bioinformatics S.L.

Categories

Categories

Integrations

Docker

Integrations

Docker
Claim Genome Analysis Toolkit (GATK) and update features and information
Claim Genome Analysis Toolkit (GATK) and update features and information
Claim ROSALIND and update features and information
Claim ROSALIND and update features and information