PBSuite Discussion

Software for Long-Read Sequencing Data from PacBio

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PBHoney Tickets

Having Problems with PBHoney? Post it here and we'll try to fix it.

Topic	Posts	Views	Last Post
[ERROR] Exception raised in task NC_008401.2:ErrorCounter - __exit__ By Qincai Li on Wed May 23, 2018 08:56 AM	1	269	By Qincai Li on Wed May 23, 2018 08:56 AM
Example Fails at blasr By Ch Cu on Tue May 08, 2018 12:30 AM	2	397	By Ch Cu on Tue May 08, 2018 06:18 AM
Where can I get the right version of blasr? By Ch Cu on Tue May 08, 2018 06:17 AM	1	510	By Ch Cu on Tue May 08, 2018 06:17 AM
How PBSuite spots calcualte start and end point for insertion By medhat on Sat Nov 04, 2017 08:29 AM	1	248	By medhat on Sat Nov 04, 2017 08:29 AM
Hony spots error By medhat on Fri Oct 13, 2017 09:56 AM	1	258	By medhat on Fri Oct 13, 2017 09:56 AM
PBHoney spots parameters By Melanie Lou on Thu Sep 07, 2017 10:28 PM	2	383	By Adam English on Tue Sep 12, 2017 10:12 PM
PBHoney reported coverage By Melanie Lou on Thu Sep 07, 2017 10:39 PM	2	332	By Adam English on Tue Sep 12, 2017 09:57 PM
no output result when I ran PBHoney tails By hui-jou chou on Tue Mar 28, 2017 08:41 PM	13	654	By hui-jou chou on Thu Mar 30, 2017 05:32 PM
How to determine the actual START and END of PBHoney spots insertions By Melanie Lou on Thu Mar 09, 2017 01:22 AM	4	683	By Adam English on Thu Mar 09, 2017 03:27 AM
PBHoney insertions that do not line up in IGV snapshot By Melanie Lou on Fri Jan 20, 2017 08:02 PM	2	348	By Adam English on Sat Jan 21, 2017 12:13 AM
error while running Honey.py pie By medhat on Thu Jun 30, 2016 10:27 AM	4	618	By Afif Elghraoui on Thu Dec 29, 2016 07:22 AM
Numpy problem By Manuel Kleiner on Tue Apr 28, 2015 12:05 AM	6	2227	By Afif Elghraoui on Fri Dec 23, 2016 08:51 AM
Processing example data does not match expected results By Afif Elghraoui on Fri Dec 25, 2015 11:10 PM	5	437	By Afif Elghraoui on Thu Mar 10, 2016 05:14 PM
about the final output of PBhoney By Jia-Xing Yue on Sat Jul 25, 2015 11:24 AM	2	636	By Adam English on Fri Nov 06, 2015 09:03 PM
ConsensusCaller - 'NoneType' object has no attribute '__getitem__' By jjyy on Tue Sep 15, 2015 02:17 AM	2	930	By Adam English on Fri Sep 18, 2015 04:05 PM
HSpots.py By Ed Chen on Thu Sep 10, 2015 10:23 PM	4	508	By Adam English on Fri Sep 18, 2015 04:05 PM
about multi-processor support for blasr By Jia-Xing Yue on Wed Jul 22, 2015 08:30 AM	3	639	By Jia-Xing Yue on Sat Jul 25, 2015 10:40 AM
PBHoney tails output bug? By Nanobyte on Mon Mar 23, 2015 10:32 AM	3	849	By Nanobyte on Fri Mar 27, 2015 04:00 PM
recallSpots.py bug By Nick Booher on Thu Jun 19, 2014 02:00 AM	3	647	By Adam English on Thu Mar 26, 2015 11:01 PM
Using h5 as input By JNanayakkara on Tue Jan 13, 2015 04:01 PM	2	589	By Adam English on Thu Mar 26, 2015 11:00 PM

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