PBSuite Discussion

Software for Long-Read Sequencing Data from PacBio

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PBJelly Tickets

Having Problems with PBJelly? Post it here and we'll try to fix it.

Topic	Posts	Views	Last Post
Error during output step By Seyhan Yazar on Tue May 09, 2017 09:40 AM	2	504	By Valentina on Wed Aug 28, 2019 08:26 AM
mapping stage warning and stopped on single node with multiple cores By Lan Wu-Cavener on Fri Aug 02, 2019 09:36 PM	1	303	By Lan Wu-Cavener on Fri Aug 02, 2019 09:36 PM
Jelly quits during assembly, PBS scheduler By Zachary Calamari on Sat Apr 27, 2019 02:59 AM	3	363	By Zachary Calamari on Fri Aug 02, 2019 03:17 PM
Continued problems with Support step: PBJelly in PBSuite By Matt MacManes on Fri Mar 21, 2014 12:06 PM	4	1006	By Niraj Rayamajhi on Thu Mar 21, 2019 04:46 PM
Extraction does not finish By Gina Pham on Fri Mar 15, 2019 08:25 PM	2	215	By Gina Pham on Tue Mar 19, 2019 12:13 PM
Error at the support stage By Takako Mochizuki on Thu Feb 23, 2017 09:47 AM	2	381	By Hannes Becher on Tue Jan 29, 2019 10:05 AM
PBJelly2 Extraction Error By Greg Cary on Tue Jan 03, 2017 03:31 PM	2	459	By Mirian Tsuchiya on Thu Nov 29, 2018 02:13 PM
Assembly step never finishes By Priscila Santos on Tue Oct 30, 2018 06:19 PM	1	195	By Priscila Santos on Tue Oct 30, 2018 06:19 PM
Trouble w/ mapping step on cluster By John Martin on Tue Sep 18, 2018 01:21 AM	3	262	By John Martin on Fri Sep 21, 2018 06:55 PM
Gaps not being filled By Thiru Ramaraj on Fri Aug 10, 2018 11:02 PM	1	379	By Thiru Ramaraj on Fri Aug 10, 2018 11:02 PM
No gaps to be assembled were found By zxl124 on Thu Jul 03, 2014 03:24 AM	4	1351	By Amit Rai on Thu Jul 12, 2018 02:52 PM
Missing output.err and output.out in the output stage By Michael Bronski on Tue Oct 17, 2017 01:16 PM	2	424	By biod on Mon Mar 12, 2018 11:32 PM
Read mapping By Jose G. Pérez-Silva on Tue Mar 06, 2018 09:48 AM	1	292	By Jose G. Pérez-Silva on Tue Mar 06, 2018 09:48 AM
PBJelly for assembly/contig from ALLPATHS-lg/ CLC workbench using Lo... By biod on Wed Feb 21, 2018 03:43 PM	1	271	By biod on Wed Feb 21, 2018 03:43 PM
problem with the mapping step By Jeremie Vidal-Dupiol on Mon Nov 06, 2017 02:30 PM	2	678	By Jeremie Vidal-Dupiol on Wed Nov 08, 2017 03:06 PM
fakeQuals.py By Afif Elghraoui on Thu Jul 27, 2017 03:31 PM	3	735	By Adam English on Tue Sep 12, 2017 10:16 PM
PBJelly Output Stage By RAKESH on Tue Aug 29, 2017 09:57 PM	2	425	By Adam English on Tue Sep 12, 2017 10:15 PM
Error at extraction step: Loaded 0 reads Parsed 0 reads By Ankit Gupta on Tue Jun 20, 2017 10:21 AM	2	683	By Afif Elghraoui on Thu Jul 27, 2017 09:22 PM
Problem during output stage of PBJelly (different output issue than o... By Chad Tomlinson on Fri Jul 21, 2017 07:05 PM	1	344	By Chad Tomlinson on Fri Jul 21, 2017 07:05 PM
Mapping error with the example dataset By Andrey Yurchenko on Fri Jun 30, 2017 03:58 PM	1	367	By Andrey Yurchenko on Fri Jun 30, 2017 03:58 PM
PBjelly2 failes at output step By Christian on Wed Jan 18, 2017 11:12 AM	4	531	By Adam English on Thu Jun 01, 2017 03:29 PM
Assembly step runtime By miquelgralo on Thu May 25, 2017 05:08 AM	2	473	By Adam English on Thu Jun 01, 2017 03:27 PM
for the output stages By chengjun zhang on Sat May 13, 2017 05:15 PM	1	261	By chengjun zhang on Sat May 13, 2017 05:15 PM
problem with mapping By Edi Sudianto on Mon Mar 06, 2017 05:28 AM	2	547	By Cristina Osuna on Wed Mar 08, 2017 01:12 PM
Steps for new installation with compatible blasr version? By Jesse Connell on Wed Jan 25, 2017 09:04 PM	9	1436	By Brad Langhorst on Wed Mar 01, 2017 05:58 AM

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